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Merge pull request #53 from jag1g13/dev
Rename `master` branch to `main`
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.github/workflows/python-package.yml

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on:
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push:
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branches: [ master, dev ]
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branches: [ main, dev ]
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pull_request:
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branches: [ master, dev ]
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branches: [ main, dev ]
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jobs:
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build:
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# This path is specific to Ubuntu
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path: ${{ steps.pip-cache.outputs.dir }}
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# Look to see if there is a cache hit for the corresponding requirements file
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key: ${{ runner.os }}-pip-${{ hashFiles('pyproject.toml') }}
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key: ${{ runner.os }}-${{ matrix.python-version }}-pip-${{ hashFiles('pyproject.toml') }}
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restore-keys: |
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${{ runner.os }}-pip-
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${{ runner.os }}-
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${{ runner.os }}-${{ matrix.python-version }}-pip-
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- name: Install dependencies
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run: |

CHANGELOG.md

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All notable changes to this project will be documented in this file. See [standard-version](https://github.com/conventional-changelog/standard-version) for commit guidelines.
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## [2.0.0](https://github.com/jag1g13/pycgtool/compare/v2.0.0-beta.5...v2.0.0) (2022-03-16)
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## [2.0.0-beta.5](https://github.com/jag1g13/pycgtool/compare/v1.0.2...v2.0.0-beta.5) (2021-11-14)
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README.md

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These files provide the atomistic-to-CG mapping and bonded topology respectively and use a format similar to GROMACS `.itp` files.
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Topology and trajectory files are processed using [MDTraj](https://www.mdtraj.org) so most common formats are accepted.
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Example mapping and bond files are present in the [test/data](https://github.com/jag1g13/pycgtool/tree/master/test/data) directory.
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Example mapping and bond files are present in the [test/data](https://github.com/jag1g13/pycgtool/tree/main/test/data) directory.
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The format of these files is described fully in the [documentation page on file formats](https://pycgtool.readthedocs.io/en/dev/file-formats.html).
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For more information, see [the tutorial](https://pycgtool.readthedocs.io/en/master/tutorial.html).
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For more information, see [the tutorial](https://pycgtool.readthedocs.io/en/main/tutorial.html).
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It is important to perform validation of any new parameter set - a brief example is present at the end of the tutorial.
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For a full list of options, see the [documentation](https://pycgtool.readthedocs.io/en/master/index.html) or use:
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For a full list of options, see the [documentation](https://pycgtool.readthedocs.io/en/main/index.html) or use:
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```
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pycgtool -h
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```

pyproject.toml

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[tool.poetry]
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name = "pycgtool"
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version = "2.0.0-beta.5"
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version = "2.0.0"
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description = "Generate coarse-grained molecular dynamics models from atomistic trajectories."
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authors = ["James Graham <j.graham@soton.ac.uk>"]
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license = "GPL-3.0-only"
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readme = "README.md"
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homepage = "https://github.com/jag1g13/pycgtool"
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repository = "https://github.com/jag1g13/pycgtool"
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documentation = "https://pycgtool.readthedocs.io/en/master/"
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documentation = "https://pycgtool.readthedocs.io/en/main/"
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keywords = [
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"molecular-dynamics",

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