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lines changed Original file line number Diff line number Diff line change @@ -5,9 +5,9 @@ name: Python package
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on :
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push :
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- branches : [ master , dev ]
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+ branches : [ main , dev ]
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pull_request :
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- branches : [ master , dev ]
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+ branches : [ main , dev ]
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jobs :
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build :
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# This path is specific to Ubuntu
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path : ${{ steps.pip-cache.outputs.dir }}
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# Look to see if there is a cache hit for the corresponding requirements file
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- key : ${{ runner.os }}-pip-${{ hashFiles('pyproject.toml') }}
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+ key : ${{ runner.os }}-${{ matrix.python-version }}- pip-${{ hashFiles('pyproject.toml') }}
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restore-keys : |
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- ${{ runner.os }}-pip-
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- ${{ runner.os }}-
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+ ${{ runner.os }}-${{ matrix.python-version }}-pip-
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- name : Install dependencies
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run : |
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All notable changes to this project will be documented in this file. See [ standard-version] ( https://github.com/conventional-changelog/standard-version ) for commit guidelines.
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+ ## [ 2.0.0] ( https://github.com/jag1g13/pycgtool/compare/v2.0.0-beta.5...v2.0.0 ) (2022-03-16)
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## [ 2.0.0-beta.5] ( https://github.com/jag1g13/pycgtool/compare/v1.0.2...v2.0.0-beta.5 ) (2021-11-14)
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Original file line number Diff line number Diff line change @@ -64,13 +64,13 @@ Input to PyCGTOOL is an atomistic simulation trajectory in the form of a topolog
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These files provide the atomistic-to-CG mapping and bonded topology respectively and use a format similar to GROMACS ` .itp ` files.
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Topology and trajectory files are processed using [ MDTraj] ( https://www.mdtraj.org ) so most common formats are accepted.
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- Example mapping and bond files are present in the [ test/data] ( https://github.com/jag1g13/pycgtool/tree/master /test/data ) directory.
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+ Example mapping and bond files are present in the [ test/data] ( https://github.com/jag1g13/pycgtool/tree/main /test/data ) directory.
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The format of these files is described fully in the [ documentation page on file formats] ( https://pycgtool.readthedocs.io/en/dev/file-formats.html ) .
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- For more information, see [ the tutorial] ( https://pycgtool.readthedocs.io/en/master /tutorial.html ) .
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+ For more information, see [ the tutorial] ( https://pycgtool.readthedocs.io/en/main /tutorial.html ) .
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It is important to perform validation of any new parameter set - a brief example is present at the end of the tutorial.
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- For a full list of options, see the [ documentation] ( https://pycgtool.readthedocs.io/en/master /index.html ) or use:
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+ For a full list of options, see the [ documentation] ( https://pycgtool.readthedocs.io/en/main /index.html ) or use:
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```
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pycgtool -h
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```
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[tool .poetry ]
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name = " pycgtool"
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- version = " 2.0.0-beta.5 "
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+ version = " 2.0.0"
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description = " Generate coarse-grained molecular dynamics models from atomistic trajectories."
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authors = [" James Graham <j.graham@soton.ac.uk>" ]
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license = " GPL-3.0-only"
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readme = " README.md"
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homepage = " https://github.com/jag1g13/pycgtool"
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repository = " https://github.com/jag1g13/pycgtool"
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- documentation = " https://pycgtool.readthedocs.io/en/master /"
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+ documentation = " https://pycgtool.readthedocs.io/en/main /"
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keywords = [
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" molecular-dynamics" ,
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