Merge branch 'release1.2'

Author: mitsuaki1987

.gitignore

@@ -112,7 +112,8 @@ Makefile
 make.sys
 *backup*
 *cisajs*.dat
-*Time*
+*Time_*
+*_Time*
 *.a
 *.aux
 *.bbl
@@ -126,11 +127,11 @@ userguide_*.pdf
 *.synctex.gz
 *.toc
 *~
-build
+build*
 #*
 html/
 GPATH
 GRTAGS
 GTAGS
 .idea
-.DS_Store
+.DS_Store

HPhiconfig.sh

@@ -27,7 +27,7 @@ else
         cat > src/make.sys <<EOF
 CC = mpicc
 LAPACK_FLAGS = -Dlapack -mkl=parallel 
-FLAGS = -qopenmp -O3 -xHOST -mcmodel=large -shared-intel -D MPI -g -traceback
+FLAGS = -qopenmp -O3 -ipo -xHOST -mcmodel=large -shared-intel -D MPI -g -traceback
 MTFLAGS = -DDSFMT_MEXP=19937 \$(FLAGS)
 INCLUDE_DIR=./include
 CP = cp -f -v
@@ -87,7 +87,7 @@ EOF
         cat > src/make.sys <<EOF
 CC = gcc
 LAPACK_FLAGS = -Dlapack -framework Accelerate 
-FLAGS = -fopenmp 
+FLAGS = -fopenmp -lm -O3  -D_OSX
 MTFLAGS = -DDSFMT_MEXP=19937 \$(FLAGS)
 INCLUDE_DIR=./include
 CP = cp -f -v
@@ -97,7 +97,7 @@ EOF
         cat > src/make.sys <<EOF
 CC = gcc
 LAPACK_FLAGS = -Dlapack -llapack -lblas
-FLAGS = -fopenmp  -lm
+FLAGS = -fopenmp  -lm -O3
 MTFLAGS = -DDSFMT_MEXP=19937 \$(FLAGS)
 INCLUDE_DIR=./include
 CP = cp -f -v

config/gcc.cmake

@@ -1,2 +1,3 @@
 # for GCC Compiler
 set(CMAKE_C_COMPILER "gcc" CACHE STRING "" FORCE)
+#set(CMAKE_C_FLAGS_RELEASE "-Wall -W -Werror=format-security" CACHE STRING "" FORCE)

doc/HPhi_paper/tex/paper.pdf

@@ -53,6 +53,8 @@ \subsection{Contributors}
 \label{subsec:contributors}
 This software is developed by following contributors.
 \begin{itemize}
+\item{ver.1.2 (released at 2016/11/14)}
+\item{ver.1.1 (released at 2016/5/13)}
 \item{ver.1.0 (released at 2016/4/5)}
 \begin{itemize}
 	\item{\bf Developers}

src/doxygen_objdb_2470.tmp renamed to doc/HPhi_paper/tex/paper.spl

@@ -41,7 +41,7 @@ \section{Installation}
 You can download $\HPhi$ in the following place.\\
 \url{https://github.com/QLMS/HPhi/releases}
 
-You can obtain the $\HPhi$ directory by tiping
+You can obtain the $\HPhi$ directory by typing
 \begin{verbatim}
 $ tar xzvf HPhi-xxx.tar.gz
 \end{verbatim}
@@ -57,7 +57,7 @@ \subsection{Using \texttt{HPhiconfig.sh}}
 \end{verbatim}
 Then environmental configuration file \verb|make.sys| is generated in 
 \verb|src/| directory.
-The command-line argment of \verb|HPhiconfig.sh| is as folows:
+The command-line argument of \verb|HPhiconfig.sh| is as follows:
 \begin{itemize}
 \item \verb|sekirei| : ISSP system-B ''sekirei''
 \item \verb|maki| : ISSP system-C ''maki''
@@ -76,7 +76,7 @@ \subsection{Using \texttt{HPhiconfig.sh}}
  MTFLAGS = -DDSFMT_MEXP=19937 $(FLAGS)
  INCLUDE_DIR=./include
 \end{verbatim}
-We explatin macros of this file as: 
+We explain macros of this file as: 
 \begin{itemize}
 \item \verb|CC| : The Compilation command (\verb|icc|, \verb|gcc|, \verb|fccpx|)
 \item \verb|LAPACK_FLAGS| : Compilation options for LAPACK. \verb|-Dlapack| can not be removed.
@@ -187,6 +187,7 @@ \section{Directory structure}
 |    |         |-HeisenbergChain/...
 |    |         |-HeisenbergSquare/...
 |    |         |-Kagome/...
+|    |         |-Kagome36Boost/...
 |    |         |-Kitaev/...
 |    |         --S1Chain/...
 |    ---Standard/
@@ -203,11 +204,14 @@ \section{Directory structure}
 |              |-HeisenbergSquare/...
 |              |-Kitaev/...
 |              --S1Chain/...
----src/
-     |--*.c
-     |--CMakeLists.txt
-     |--include/*.h
-     ---makefile_src
+|--src/
+|    |--*.c
+|    |--CMakeLists.txt
+|    |--include/*.h
+|    |--makefile_src
+|    ---StdFace/
+|--test/
+---test_tool/
 \end{verbatim}
 
 \section{Basic usage}