Skip to content

Error in Grobid processing one particular pdf file #11

@AnnaBobasheva

Description

@AnnaBobasheva

I noticed an unusual Grobid ERROR in HAL for just one file.

07/11/2023 15:59:44 INFO     /home/issa/ISSA-2/data/hal/pdf_cache/tel-03125685v1.pdf already exists
07/11/2023 16:00:14 ERROR    descriptor 'strip' requires a 'str' object but received a 'NoneType'
Traceback (most recent call last):
  File "./extract_text_from_pdf.py", line 522, in download_and_process_all
    process_pdf(f_pdf, f_json, pdf_content=pdf_content)
  File "./extract_text_from_pdf.py", line 412, in process_pdf
    pdf_dict = xml_to_dict(paper_id, xml)
  File "./extract_text_from_pdf.py", line 360, in xml_to_dict
    body = [{'text': get_all_text_as_one(root, xml_path, sep=cfg.MERGE_SEPARATOR)}]
  File "./extract_text_from_pdf.py", line 119, in get_all_text_as_one
    text_list = get_all_text_as_list(root, element_name_or_path)
  File "./extract_text_from_pdf.py", line 102, in get_all_text_as_list
    text_list = [t for t in list(map(str.strip, text_list)) if t]
TypeError: descriptor 'strip' requires a 'str' object but received a 'NoneType'

To figure out what causes the error we need to check the XML /home/issa/ISSA-2/data/hal/dataset-2-0/20231107/xml

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions