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| 1 | +version: 2.1 |
| 2 | + |
| 3 | +orbs: |
| 4 | + # The python orb contains a set of prepackaged CircleCI configuration you can use repeatedly in your configuration files |
| 5 | + # Orb commands and jobs help you with common scripting around a language/tool |
| 6 | + # so you dont have to copy and paste it everywhere. |
| 7 | + # See the orb documentation here: https://circleci.com/developer/orbs/orb/circleci/python |
| 8 | + python: circleci/python@1.2 |
| 9 | + |
| 10 | +workflows: |
| 11 | + build-and-test: # This is the name of the workflow, feel free to change it to better match your workflow. |
| 12 | + # Inside the workflow, you define the jobs you want to run. |
| 13 | + # For more details on extending your workflow, see the configuration docs: https://circleci.com/docs/2.0/configuration-reference/#workflows |
| 14 | + jobs: |
| 15 | + - build-and-test |
| 16 | + |
| 17 | + |
| 18 | +jobs: |
| 19 | + build-and-test: # This is the name of the job, feel free to change it to better match what you're trying to do! |
| 20 | + # These next lines defines a Docker executors: https://circleci.com/docs/2.0/executor-types/ |
| 21 | + # You can specify an image from Dockerhub or use one of the convenience images from CircleCI's Developer Hub |
| 22 | + # A list of available CircleCI Docker convenience images are available here: https://circleci.com/developer/images/image/cimg/python |
| 23 | + # The executor is the environment in which the steps below will be executed - below will use a python 3.9 container |
| 24 | + # Change the version below to your required version of python |
| 25 | + docker: |
| 26 | + - image: ubuntu:bionic |
| 27 | + environment: |
| 28 | + CONDA_PREFIX: /root/tools/miniconda3 |
| 29 | + user: root |
| 30 | + working_directory: /root/tools/PyAPS |
| 31 | + # Checkout the code as the first step. This is a dedicated CircleCI step. |
| 32 | + steps: |
| 33 | + - checkout |
| 34 | + - run: |
| 35 | + name: Setting Environment with Miniconda |
| 36 | + command: | |
| 37 | + apt update |
| 38 | + apt-get update --yes && apt-get upgrade --yes |
| 39 | + apt-get install --yes wget |
| 40 | + # download and install miniconda3 |
| 41 | + mkdir -p ${HOME}/tools |
| 42 | + cd ${HOME}/tools |
| 43 | + wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh |
| 44 | + bash Miniconda3-latest-Linux-x86_64.sh -b -p ${HOME}/tools/miniconda3 |
| 45 | + ${HOME}/tools/miniconda3/bin/conda init bash |
| 46 | + ${HOME}/tools/miniconda3/bin/conda config --add channels conda-forge |
| 47 | + ${HOME}/tools/miniconda3/bin/conda install -c conda-forge --yes mamba |
| 48 | + - run: |
| 49 | + name: Installing PyAPS |
| 50 | + no_output_timeout: 10m |
| 51 | + command: | |
| 52 | + export PYTHONUNBUFFERED=1 |
| 53 | + # setup environment variable |
| 54 | + export PATH=${CONDA_PREFIX}/bin:${PATH} |
| 55 | + # install dependencies |
| 56 | + source activate root |
| 57 | + mamba install --verbose --yes fortran-compiler --file ${HOME}/tools/PyAPS/requirements.txt |
| 58 | + python -m pip install ${HOME}/tools/PyAPS |
| 59 | +
|
| 60 | + - run: |
| 61 | + name: Test the Installation |
| 62 | + command: | |
| 63 | + # setup environment variables |
| 64 | + export PATH=${CONDA_PREFIX}/bin:${PATH} |
| 65 | + # run tests |
| 66 | + python ${HOME}/tools/PyAPS/tests/test_calc.py |
| 67 | +
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