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How to perform a Bugs Import

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Roger Mähler edited this page Mar 12, 2020 · 17 revisions

Introduction

This guide gives instructions on how to perform a complete Bugs import; starting from downloading the BugsCEP database and all the way to committing an incremental data change to the SEAD staging databas via the SEAD change control system.

Overview of steps

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Prerequisites

You will need the following:

  • A system user on the SEAD production server (seadserv.humlab.umu.se).
  • The system user must be member of the docker group.
  • An understanding of the SEAD change control system.
  • A database system user with somewhat elevated privileges (create database).
  • A window of time where the SEAD staging database is frozen.

Preparation

The following assumes that you are logged on to the SEAD produciton server.

  • Use git clone or git pull to check out the latest versions of sead_change_control and sead_bugs_import. To replace the existing repositories, you can execute the following commands:
% mkdir -p ~/source && cd ~/source && rm -rf sead_change_control sead_bugs_import
% git clone https://github.com/humlab-sead/sead_change_control.git
% git clone https://github.com/humlab-sead/sead_bugs_import.gi
  • Create a new SEAD staging database. Note this will overwrite current staging!
./copydb.sh --source sead_production --target sead_staging --force --sync-sequences
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