Hydrogens appear to be incorrect and the ESP scores for the compound are very low

[danodonovan]

Thanks, I actually managed to get it working with 2.1.0 in the end, so not too worry.

However, I am currently seeing some odd out from both alignments from 2D and 3D conformers.

The output looks like this:

The hydrogens appear to be incorrect and the ESP scores for the compound are very low.

Do you have any thoughts on how to fix this?

Thanks,
Mike

Originally posted by @MKCarter in #21