Species specific results

[sheraghty]

I'm looking to pull-out species-specific patterns in gene family expansion/contraction so I can do some GO analysis. For instance, I want to see all the gene families where species A might have a significant expansion. Would I parse the branch_probabilities.tab file to get this information (pull out all the gene families with probabilities below 0.05 and then check with the change.tab file to see if it was an expansion or contraction)?

[benfulton]

Yes, that sounds right.