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Answered by
joaander
Jul 3, 2025
Replies: 1 comment 1 reply
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To achieve samples on the expansion side, you need to have particles arranged so that they start to overlap when moved further apart. Star shaped polygons like yours don't tend to arrange themselves this way. I use a staple shape in the validation scripts to achieve a reasonable number of samples on the expansion side: https://github.com/glotzerlab/hoomd-validation/blob/trunk/hoomd_validation/simple_polygon.py. |
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Answer selected by
aidexs
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To achieve samples on the expansion side, you need to have particles arranged so that they start to overlap when moved further apart. Star shaped polygons like yours don't tend to arrange themselves this way. I use a staple shape in the validation scripts to achieve a reasonable number of samples on the expansion side: https://github.com/glotzerlab/hoomd-validation/blob/trunk/hoomd_validation/simple_polygon.py.