Recomend ways to filter cactus result

[zhangzhiyangcs]

Hi,
Is there a recommend ways to filter cactus result. I used hal2maf to export the maf file below. But I think it is too crush to analysis. Species in my research didn't have whole genome duplication. I just want get accuracy single orthologous region to analysis the evolution of species. Thanks a lot.

######result
a
s species.7 41722 25 + 108824248 AGGTTGTGAATTCAGTGTAAAAAAA
s species.scaffold150296_ 35684 24 + 227144 AGGTTGTGAATTCAGTG-AAAAAAA
s species.Chr_2 3333509 25 - 121189074 AGGTTGTGAATTCAGTGTAAAAAAA
s species.JAABOM010007334.1 150858493 25 + 258112721 AGGTTGTGaattgagttaaaaaaaa
s species.ptg000025l 1689578 25 - 104603436 AGGTTGTGAATTCAGTGTAAAAAAA
s species.ptg000062l 624533 25 + 1011275 AGGTTGTGAATTCAGTGTAAAAAAA
s species.Chr_4 2552098 25 + 111331358 AGGTTGTGAATTCGGTGAAAAAAAA
s species.Chr_4 2628773 20 - 111136906 ----TGTAAATTTAGTGAAAAAAA-

a
s species.7 41857 7 + 108824248 TTTATGT
s species.scaffold150296_ 35818 7 + 227144 TTTTTTT
s species.Chr_2 3333644 7 - 121189074 TTTATGT
s species.JAABOM010007334.1 150858632 7 + 258112721 ttttttt
s species.ptg000025l 1689713 7 - 104603436 TTTATGT
s species.ptg000062l 624668 7 + 1011275 TTTATGT
s Solanum_lycopersicum.7 67894261 4 - 68659810 -T--TTT
s species.Chr_4 2552233 7 + 111331358 TTTTTTT
s Solanum_tuberosumDM.chr07 56375821 4 - 57639317 -T--TTT
s Solanum_tuberosumE463.E463_chr07 54748467 4 - 55985717 -T--TTT
s Solanum_tuberosum_stenotomumA626.A626_chr07 57480235 4 - 58521000 -T--TTT
s species.Chr_4 2628905 7 - 111136906 TTTTTTT
s etu.7 67894261 4 - 68659810 -T--TTT