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ci:macos: test with mpich and openmpi
ci:build workflow
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‎.github/workflows/ci.yml

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name: ci
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env:
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CTEST_PARALLEL_LEVEL: 4
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CMAKE_BUILD_TYPE: Release
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HOMEBREW_NO_INSTALL_CLEANUP: 1
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on:
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push:
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jobs:
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linux:
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runs-on: ubuntu-latest
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timeout-minutes: 15
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strategy:
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matrix:
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os: [ubuntu-latest, macos-latest]
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shared: [true, false]
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gcc: [8, 11]
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mpi: [mpich, openmpi]
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exclude:
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- os: macos-latest
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mpi: mpich
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- os: macos-latest
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gcc: 8
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runs-on: ${{ matrix.os }}
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env:
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CC: gcc-${{ matrix.gcc }}
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FC: gfortran-${{ matrix.gcc }}
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python-version: '3.10'
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- name: Python pkgs
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run: pip install numpy h5py pandas matplotlib
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run: pip install numpy h5py
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- name: install hdf5
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- name: install HDF5-${{ matrix.mpi }} (Linux)
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if: runner.os == 'Linux'
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run: |
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sudo apt update
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sudo apt install --no-install-recommends gcc-${{ matrix.gcc }} gfortran-${{ matrix.gcc}} ninja-build libhdf5-openmpi-dev hdf5-tools libopenmpi-dev openmpi-bin
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sudo apt install --no-install-recommends gcc-${{ matrix.gcc }} gfortran-${{ matrix.gcc}} ninja-build libhdf5-${{ matrix.mpi }}-dev hdf5-tools lib${{ matrix.mpi }}-dev
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- name: Install HDF5-${{ matrix.mpi }} (MacOS)
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if: runner.os == 'macOS'
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run: brew install hdf5-mpi ninja ${{ matrix.mpi }}
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- uses: actions/checkout@v2
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- name: install hdf5
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run: |
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sudo apt update
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sudo apt install --no-install-recommends libhdf5-openmpi-dev hdf5-tools libopenmpi-dev openmpi-bin
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sudo apt install --no-install-recommends libhdf5-mpi-dev hdf5-tools mpi-default-dev mpi-default-bin
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- name: install Gcovr
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run: pip install gcovr
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with:
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name: coverage-report-html
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path: build-coverage/coverage/
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linux-build:
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needs: linux
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runs-on: ubuntu-latest
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timeout-minutes: 15
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strategy:
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matrix:
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shared: [true, false]
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steps:
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- name: install MPI
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run: |
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sudo apt update
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sudo apt install --no-install-recommends libopenmpi-dev openmpi-bin
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- uses: actions/checkout@v2
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- name: Configure HDF5-MPI
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run: cmake -S scripts -B scripts/build -DCMAKE_INSTALL_PREFIX=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }}
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- name: Build/install HDF5
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run: cmake --build scripts/build --parallel
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- name: configure h5fortran
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run: cmake -B build -DCMAKE_INSTALL_PREFIX=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }} -DCMAKE_PREFIX_PATH=${{ runner.temp }}
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- name: build h5fortran
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run: cmake --build build --parallel
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- name: test h5fortran
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run: ctest --test-dir build --preset default
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- name: install h5fortran
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run: cmake --install build
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- name: configure examples
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run: cmake -S example -B example/build -DCMAKE_PREFIX_PATH:PATH=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }}
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- name: build Examples
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run: cmake --build example/build --parallel
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- name: Test Examples
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run: ctest --test-dir example/build -V

‎.github/workflows/ci_build.yml

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name: build
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on:
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push:
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paths:
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- "scripts/CMakeLists.txt"
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- "cmake/libraries.json"
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- ".github/workflows/ci_build.yml"
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release:
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types: [published]
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jobs:
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linux:
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runs-on: ubuntu-latest
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timeout-minutes: 15
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strategy:
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matrix:
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shared: [true, false]
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steps:
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- name: install MPI
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run: |
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sudo apt update
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sudo apt install --no-install-recommends libopenmpi-dev openmpi-bin
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- uses: actions/checkout@v2
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- name: Configure HDF5-MPI
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run: cmake -S scripts -B scripts/build -DCMAKE_INSTALL_PREFIX=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }}
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- name: Build/install HDF5
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run: cmake --build scripts/build --parallel
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- name: configure h5fortran
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run: cmake -B build -DCMAKE_INSTALL_PREFIX=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }} -DCMAKE_PREFIX_PATH=${{ runner.temp }}
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- name: build h5fortran
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run: cmake --build build --parallel
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- name: test h5fortran
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run: ctest --test-dir build --preset default
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- name: install h5fortran
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run: cmake --install build
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- name: configure examples
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run: cmake -S example -B example/build -DCMAKE_PREFIX_PATH:PATH=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }}
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- name: build Examples
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run: cmake --build example/build --parallel
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- name: Test Examples
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run: ctest --test-dir example/build -V
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macos:
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runs-on: macos-latest
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timeout-minutes: 20
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strategy:
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matrix:
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shared: [false]
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mpi: [mpich, open-mpi]
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# HDF5-MPI upstream is broken for shared MacOS builds.
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steps:
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- uses: actions/checkout@v2
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- name: Install MPI
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run: brew install ${{ matrix.mpi }}
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- name: Configure HDF5 with ${{ matrix.mpi }}
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run: cmake -S scripts -B scripts/build -DCMAKE_INSTALL_PREFIX=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }}
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- name: Build/install HDF5
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run: cmake --build scripts/build --parallel
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- name: configure h5fortran with ${{ matrix.mpi }}
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run: cmake -B build -DCMAKE_INSTALL_PREFIX=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }} -DCMAKE_PREFIX_PATH=${{ runner.temp }}
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- name: build h5fortran
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run: cmake --build build --parallel
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- name: test h5fortran
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run: ctest --test-dir build --preset default
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- name: install h5fortran
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run: cmake --install build
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- name: configure examples
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run: cmake -S example -B example/build -DCMAKE_PREFIX_PATH:PATH=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }}
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- name: build Examples
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run: cmake --build example/build --parallel
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- name: Test Examples
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run: ctest --test-dir example/build -V

‎.github/workflows/ci_macos.yml

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strategy:
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matrix:
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shared: [true, false]
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# HDF5-MPI upstream is broken for shared MacOS builds.
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mpi: [mpich, open-mpi]
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steps:
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run: pip install h5py
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- name: Install HDF5-MPI
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run: brew install hdf5-mpi ninja open-mpi
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run: brew install hdf5-mpi ninja ${{ matrix.mpi }}
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- uses: actions/checkout@v2
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- run: cmake --preset multi -DCMAKE_INSTALL_PREFIX=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }}
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- name: configure with ${{ matrix.mpi }}
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run: cmake --preset multi -DCMAKE_INSTALL_PREFIX=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }}
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- run: cmake --build --preset debug
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- run: ctest --preset debug
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strategy:
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matrix:
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shared: [false]
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mpi: [mpich, open-mpi]
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# HDF5-MPI upstream is broken for shared MacOS builds.
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steps:
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- name: Install MPI
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run: brew install open-mpi
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- name: Configure HDF5
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- name: Configure HDF5 with ${{ matrix.mpi }}
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run: cmake -S scripts -B scripts/build -DCMAKE_INSTALL_PREFIX=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }}
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- name: Build/install HDF5
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run: cmake --build scripts/build --parallel
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- run: cmake -B build -DCMAKE_INSTALL_PREFIX=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }} -DCMAKE_PREFIX_PATH=${{ runner.temp }}
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- run: cmake --build build --parallel
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- run: ctest --test-dir build --preset default
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- run: cmake --install build
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- name: configure h5fortran with ${{ matrix.mpi }}
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run: cmake -B build -DCMAKE_INSTALL_PREFIX=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }} -DCMAKE_PREFIX_PATH=${{ runner.temp }}
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- name: build h5fortran
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run: cmake --build build --parallel
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- name: test h5fortran
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run: ctest --test-dir build --preset default
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- name: install h5fortran
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run: cmake --install build
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- name: configure examples
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run: cmake -S example -B example/build -DCMAKE_PREFIX_PATH:PATH=${{ runner.temp }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.shared }}
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- name: build Examples
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run: cmake --build example/build --parallel
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- name: Test Examples
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run: ctest --test-dir example/build -V

‎README.md

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[![DOI](https://zenodo.org/badge/377901005.svg)](https://zenodo.org/badge/latestdoi/377901005)
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[![ci](https://github.com/geospace-code/h5fortran-mpi/actions/workflows/ci.yml/badge.svg)](https://github.com/geospace-code/h5fortran-mpi/actions/workflows/ci.yml)
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[![ci_macos](https://github.com/geospace-code/h5fortran-mpi/actions/workflows/ci_macos.yml/badge.svg)](https://github.com/geospace-code/h5fortran-mpi/actions/workflows/ci_macos.yml)
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[![ci](https://github.com/geospace-code/h5fortran-mpi/actions/workflows/ci_build.yml/badge.svg)](https://github.com/geospace-code/h5fortran-mpi/actions/workflows/ci_build.yml)
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[![intel-oneapi](https://github.com/geospace-code/h5fortran-mpi/actions/workflows/intel-oneapi.yml/badge.svg)](https://github.com/geospace-code/h5fortran-mpi/actions/workflows/intel-oneapi.yml)
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Easy to use object-oriented Fortran [parallel HDF5-MPI](https://portal.hdfgroup.org/display/HDF5/Parallel+HDF5) interface.

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