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Description
I ran uvx planemo list
(list
is not actually a command) and got the following error message:
Built glob2==0.7
█░░░░░░░░░░░░░░░░░░░ [9/93] zipstream-new==1.1.8 warning: The module `galaxy` is provided by more than one package, which causes an install race condition and can result in a broken module. Consider removing your dependency on either `galaxy-util` (v25.0.2) or `galaxy-tool-util` (v25.0.2).
████████░░░░░░░░░░░░ [39/93] tabulate==0.9.0 warning: The module `galaxy` is provided by more than one package, which causes an install race condition and can result in a broken module. Consider removing your dependency on either `galaxy-tool-util-models` (v25.0.2) or `galaxy-tool-util` (v25.0.2).
Installed 93 packages in 179ms
/Users/cthoyt/.cache/uv/archive-v0/Zk12WzPFXCeRzQp5yGFD7/lib/python3.13/site-packages/glob2/fnmatch.py:141: SyntaxWarning: invalid escape sequence '\Z'
return '(?ms)' + res + '\Z'
Traceback (most recent call last):
File "/Users/cthoyt/.cache/uv/archive-v0/Zk12WzPFXCeRzQp5yGFD7/lib/python3.13/site-packages/planemo/cli.py", line 75, in name_to_command
mod = __import__(mod_name, None, None, ["cli"])
ModuleNotFoundError: No module named 'planemo.commands.cmd_list'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Users/cthoyt/.cache/uv/archive-v0/Zk12WzPFXCeRzQp5yGFD7/bin/planemo", line 12, in <module>
sys.exit(planemo())
~~~~~~~^^
File "/Users/cthoyt/.cache/uv/archive-v0/Zk12WzPFXCeRzQp5yGFD7/lib/python3.13/site-packages/click/core.py", line 1442, in __call__
return self.main(*args, **kwargs)
~~~~~~~~~^^^^^^^^^^^^^^^^^
File "/Users/cthoyt/.cache/uv/archive-v0/Zk12WzPFXCeRzQp5yGFD7/lib/python3.13/site-packages/click/core.py", line 1363, in main
rv = self.invoke(ctx)
File "/Users/cthoyt/.cache/uv/archive-v0/Zk12WzPFXCeRzQp5yGFD7/lib/python3.13/site-packages/click/core.py", line 1824, in invoke
cmd_name, cmd, args = self.resolve_command(ctx, args)
~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
File "/Users/cthoyt/.cache/uv/archive-v0/Zk12WzPFXCeRzQp5yGFD7/lib/python3.13/site-packages/click/core.py", line 1871, in resolve_command
cmd = self.get_command(ctx, cmd_name)
File "/Users/cthoyt/.cache/uv/archive-v0/Zk12WzPFXCeRzQp5yGFD7/lib/python3.13/site-packages/planemo/cli.py", line 88, in get_command
return name_to_command(name)
File "/Users/cthoyt/.cache/uv/archive-v0/Zk12WzPFXCeRzQp5yGFD7/lib/python3.13/site-packages/planemo/cli.py", line 77, in name_to_command
raise Exception(f"Problem loading command {name}, exception {e}")
Exception: Problem loading command list, exception No module named 'planemo.commands.cmd_list'
I guess it's doing some sketchy dynamic importing. Instead of writing the message like this, it should catch the ModuleNotFoundError and instead give a simpler message that says that there's no plugin for that command
bgruening
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