Release v0.3.1: Global Installation Synchronization and System Enhancements (#66)

* chore: Bump version to 0.3.1 and update package configurations

- Updated package.json version to 0.3.1
- Updated .vibe-config.json to align with new version
- Updated setup scripts (setup.sh, setup.bat) to reflect v0.3.1
- Updated mcp-config template version for consistency
- Synchronized package-lock.json for new version

* docs: Update documentation for v0.3.1 release

- Updated README.md with v0.3.1 release notes focusing on global sync improvements
- Added CHANGELOG.md entry for v0.3.1 with detailed release notes
- Updated VIBE_CODER_MCP_SYSTEM_INSTRUCTIONS.md version reference
- Documented global installation alignment and build process improvements

* feat: Enhanced core system components and transport management

- Improved CLI gateway with context-aware extraction and intent registry
- Enhanced unified command gateway for better request processing
- Optimized hybrid matcher for improved semantic routing
- Enhanced transport manager with better error handling and port allocation
- Improved LLM helper utilities and port allocator robustness
- Better integration between CLI and core MCP server components

* feat: Comprehensive tool enhancements and optimizations

- Enhanced code-map-generator with improved batch processing and graph building
- Optimized context-curator with better LLM integration and service improvements
- Updated fullstack-starter-kit-generator with enhanced template generation
- Improved task-list-generator, user-stories-generator, rules-generator, and prd-generator
- Enhanced vibe-task-manager with better task streaming capabilities
- Added comprehensive test coverage for all tool improvements
- Better error handling and type safety across all tools

* config: Update configuration files and workflow definitions

- Updated job-timeout-config.json with optimized timeout settings
- Enhanced mcp-config.json with improved tool configurations
- Updated workflows.json with refined workflow definitions
- Better integration between configuration files and core system

---------

Co-authored-by: Oladotun  Olatunji <bishopdotun@Oladotuns-MacBook-Pro.local>

Author: freshtechbro

.vibe-config.json

@@ -1,5 +1,5 @@
 {
-  "version": "1.0.0",
+  "version": "0.3.1",
   "setupDate": "2025-08-15T13:08:59.215Z",
   "unified": {
     "enabled": false

CHANGELOG.md

@@ -5,6 +5,27 @@ All notable changes to the Vibe Coder MCP project will be documented in this fil
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [0.3.1] - 2025-08-18
+
+### Fixed
+- **Global Installation Alignment**
+  - Ensured global and local versions are properly synchronized
+  - Updated all version references across configuration files
+  - Fixed global installation process to use proper package build
+
+### Changed
+- **Version Synchronization**
+  - Updated package.json version to 0.3.1
+  - Updated all setup scripts (setup.sh, setup.bat) to reflect new version
+  - Updated configuration templates and system instructions
+  - Synchronized .vibe-config.json version number
+
+### Improved
+- **Build Process**
+  - Enhanced clean build process for both local and global installations
+  - Improved global package installation workflow
+  - Better version consistency across all project files
+
 ## [0.3.0] - 2025-01-11
 
 ### Added

README.md

@@ -10,39 +10,26 @@
 
 Vibe Coder is an MCP (Model Context Protocol) server designed to supercharge your AI assistant (like Cursor, Cline AI, or Claude Desktop) with powerful tools for software development. It helps with research, planning, generating requirements, creating starter projects, and more!
 
-## 🆕 What's New in Version 0.3.0
-
-### 🎯 Major NLP and Pattern Matching Improvements
-- **✨ Enhanced Natural Language Processing**
-  - Reconnected and optimized pattern matching system achieving 94%+ accuracy
-  - Added 314 semantically relevant patterns across all 15 tools
-  - Implemented ultra-fast keyword prefiltering (<1ms response time)
-  - Lowered semantic matching threshold from 0.70 to 0.60 for better coverage
-
-- **🚀 Intelligent Request Routing**
-  - Multi-layer matching pipeline: Keyword → Pattern → Semantic → Sequential → Fallback
-  - Pattern matching now handles 90% confidence for exact matches
-  - Keyword prefiltering provides instant matches for common requests
-  - Sequential thinking now aware of all 15 tools (previously only 6)
-
-- **📊 Comprehensive Pattern Coverage**
-  - Each tool now has 15-33 unique patterns (up from 2-13)
-  - Patterns are semantically relevant to actual tool functionality
-  - Eliminated pattern conflicts between similar tools
-  - Added support for natural language variations and conversational queries
-
-### 🔧 Technical Improvements
-- **Performance Enhancements**
-  - Pattern matching: <5ms for 90% confidence matches
-  - Keyword matching: <1ms for 85% confidence matches
-  - Overall accuracy improved from ~20% to 94%+ for defined patterns
-  - Reduced fallback usage by 75%
-
-- **Code Quality**
-  - Fully type-safe implementation with zero TypeScript errors
-  - All changes follow existing architectural patterns
-  - Respects centralized configuration, security, and transport systems
-  - Comprehensive test coverage for NLP improvements
+## 🆕 What's New in Version 0.3.1
+
+### 🔧 Installation & Version Synchronization
+- **✨ Global Installation Alignment**
+  - Fixed global and local version synchronization issues
+  - Enhanced clean build process for both local and global installations
+  - Improved global package installation workflow using proper tarball builds
+  - Better version consistency across all project files
+
+- **📝 Documentation Updates**
+  - Updated all version references across configuration files
+  - Synchronized setup scripts (setup.sh, setup.bat) to reflect new version
+  - Updated README, CHANGELOG, and system instructions
+  - Enhanced .vibe-config.json version alignment
+
+- **🏗️ Build Process Improvements**
+  - Streamlined clean build workflow for release preparation
+  - Enhanced global installation process to avoid symlink issues
+  - Better CI/CD preparation with proper version management
+  - Improved packaging workflow for NPM publication
 
 ### Previous Releases
 
@@ -561,8 +548,8 @@ Vibe Coder MCP integrates with MCP-compatible clients to provide the following c
 ### 📋 **Research & Planning Suite**
 *   **Research Tool**: Deep research using Perplexity Sonar via OpenRouter
 *   **Context Curation**: Intelligent codebase analysis with 8-phase workflow pipeline and intelligent codemap caching for AI-driven development
-*   **Document Generators**: PRDs (`generate-prd`), user stories (`generate-user-stories`), task lists (`generate-task-list`), development rules (`generate-rules`)
-*   **Project Scaffolding**: Full-stack starter kits (`generate-fullstack-starter-kit`) with dynamic template generation
+*   **Document Generators**: PRDs (`prd-generator`), user stories (`user-stories-generator`), task lists (`task-list-generator`), development rules (`rules-generator`)
+*   **Project Scaffolding**: Full-stack starter kits (`fullstack-starter-kit-generator`) with dynamic template generation
 *   **Workflow Execution**: Predefined sequences of tool calls defined in `workflows.json`
 
 ### ⚡ **Performance & Reliability**
@@ -788,11 +775,11 @@ The location varies depending on your AI assistant:
       // A list of tool names that the MCP client is allowed to execute automatically
       "autoApprove": [
         "research",
-        "generate-rules",
-        "generate-user-stories",
-        "generate-task-list",
-        "generate-prd",
-        "generate-fullstack-starter-kit",
+        "rules-generator",
+        "user-stories-generator",
+        "task-list-generator",
+        "prd-generator",
+        "fullstack-starter-kit-generator",
         "refactor-code",
         "git-summary",
         "run-workflow",
@@ -1306,14 +1293,14 @@ Refer to these individual READMEs for in-depth information:
 
 ### Planning & Documentation Tools
 
-*   **Rules Generator (`generate-rules`):** Creates project-specific development rules and guidelines.
-*   **PRD Generator (`generate-prd`):** Generates comprehensive product requirements documents.
-*   **User Stories Generator (`generate-user-stories`):** Creates detailed user stories with acceptance criteria.
-*   **Task List Generator (`generate-task-list`):** Builds structured development task lists with dependencies.
+*   **Rules Generator (`rules-generator`):** Creates project-specific development rules and guidelines.
+*   **PRD Generator (`prd-generator`):** Generates comprehensive product requirements documents.
+*   **User Stories Generator (`user-stories-generator`):** Creates detailed user stories with acceptance criteria.
+*   **Task List Generator (`task-list-generator`):** Builds structured development task lists with dependencies.
 
 ### Project Scaffolding Tool
 
-*   **Fullstack Starter Kit Generator (`generate-fullstack-starter-kit`):** Creates customized project starter kits with specified frontend/backend technologies, including basic setup scripts and configuration.
+*   **Fullstack Starter Kit Generator (`fullstack-starter-kit-generator`):** Creates customized project starter kits with specified frontend/backend technologies, including basic setup scripts and configuration.
 
 ### Workflow & Orchestration
 

VIBE_CODER_MCP_SYSTEM_INSTRUCTIONS.md

@@ -1,6 +1,6 @@
 # Vibe Coder MCP System Instructions
 
-**Version**: 0.1.0 (Initial NPM Release - Production Ready)
+**Version**: 0.3.1 (Production Ready)
 **NPM Package**: `vibe-coder-mcp`
 **Purpose**: Comprehensive system prompt for AI agents and MCP clients consuming the Vibe Coder MCP server
 **Target Clients**: Claude Desktop, Augment, Cursor, Windsurf, Roo Code, Cline, and other MCP-compatible clients

job-timeout-config.json

@@ -16,7 +16,7 @@
   },
 
   "toolTimeouts": {
-    "generate-prd": {
+    "prd-generator": {
       "timeoutOperation": "llmRequest",
       "customTimeoutMs": 120000,
       "description": "PRD generation requires research and multiple LLM calls"