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Description
- to replace
visiview.ome_companion_utils
- to replace metadata handling in other formats, i.e.
hcs.cellvoyager
andhcs.imagexpress
For example, this could be a mapping for the cellvoyager
format:
channel_metadata.channel_name
=> Image.Pixels.Channel.id
channel_metadata.display_color
=> Image.Pixels.Channel.color
channel_metadata.spatial_calibration_x
=> Image.Pixels.physical_size_x
with Image.Pixels.physical_size_x_unit
channel_metadata.spatial_calibration_y
=> Image.Pixels.physical_size_y
with Image.Pixels.physical_size_y_unit
channel_metadata.spatial_calibration_units
=> per dimension, see above
channel_metadata.z_spacing
=> Image.Pixels.physical_size_z
channel_metadata.wavelength
=> Image.Pixels.Channel.emission_wavelength
channel_metadata.exposure_time
=> ?
channel_metadata.exposure_time_unit
=> ?
channel_metadata.objective
=> Image.ObjectiveSettings.id
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