From d7d08761268964e7eee86171165d4cd6a94e33f7 Mon Sep 17 00:00:00 2001 From: Matt McCormick Date: Sat, 30 Nov 2024 06:50:36 -0500 Subject: [PATCH 1/2] BUG: Remove commented test code --- test/test_ngff_validation.py | 24 ------------------------ 1 file changed, 24 deletions(-) diff --git a/test/test_ngff_validation.py b/test/test_ngff_validation.py index 29a5d1af..40e5eb6d 100644 --- a/test/test_ngff_validation.py +++ b/test/test_ngff_validation.py @@ -69,27 +69,3 @@ def test_validate_0_3(): def test_validate_0_3_no_version(): test_store = Path(__file__).parent / "data" / "input" / "v03" / "9528933.zarr" from_ngff_zarr(test_store, validate=True) - - -# def test_z_y_x_valid_ngff(): -# array = np.random.random((32, 32, 16)) -# image = to_spatial_image(array) -# multiscale = to_multiscale(image, [2, 4]) - -# check_valid_ngff(multiscale) - - -# def test_z_y_x_c_valid_ngff(): -# array = np.random.random((32, 32, 16, 3)) -# image = to_spatial_image(array) -# multiscale = to_multiscale(image, [2, 4]) - -# check_valid_ngff(multiscale) - - -# def test_t_z_y_x_c_valid_ngff(): -# array = np.random.random((2, 32, 32, 16, 3)) -# image = to_spatial_image(array) -# multiscale = to_multiscale(image, [2, 4]) - -# check_valid_ngff(multiscale) From 56eb5d4e7d609a7bc9f0248be45dfe71bf951075 Mon Sep 17 00:00:00 2001 From: Matt McCormick Date: Sat, 30 Nov 2024 10:18:46 -0500 Subject: [PATCH 2/2] DOC: Update feature list --- README.md | 14 +++++++++----- docs/index.md | 7 +++++-- 2 files changed, 14 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 271493ab..4367433a 100644 --- a/README.md +++ b/README.md @@ -8,8 +8,9 @@ --- -A lean and kind Open Microscopy Environment (OME) Next Generation File Format -(NGFF) Zarr implementation. +A lean and kind +[Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr](https://ngff.openmicroscopy.org) +implementation. ## ✨ Features @@ -17,10 +18,13 @@ A lean and kind Open Microscopy Environment (OME) Next Generation File Format - Work with arbitrary Zarr store types - Lazy, parallel, and web ready -- no local filesystem required - Process extremely large datasets +- Conversion of most bioimaging file formats - Multiple downscaling methods -- Supports Python>=3.8 -- Implements version 0.4 of the - [OME-Zarr NGFF specification](https://github.com/ome/ngff) +- Supports Python>=3.9 +- Reads OME-Zarr v0.1 to v0.5 into simple Python data classes with Dask arrays +- Optional OME-Zarr data model validation during reading +- Writes OME-Zarr v0.4 to v0.5 +- Optional writing via [tensorstore](https://google.github.io/tensorstore/) ## Documentation diff --git a/docs/index.md b/docs/index.md index 1d04b4e9..f459debc 100644 --- a/docs/index.md +++ b/docs/index.md @@ -16,10 +16,13 @@ A lean and kind - Work with arbitrary Zarr store types - Lazy, parallel, and web ready -- no local filesystem required - Process extremely large datasets +- Conversion of most bioimaging file formats - Multiple downscaling methods - Supports Python>=3.9 -- Implements version 0.4 of the - [OME-Zarr NGFF specification](https://github.com/ome/ngff) +- Reads OME-Zarr v0.1 to v0.5 into simple Python data classes with Dask arrays +- Optional OME-Zarr data model validation during reading +- Writes OME-Zarr v0.4 to v0.5 +- Optional writing via [tensorstore](https://google.github.io/tensorstore/) ```{toctree} :maxdepth: 2