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... e.g. after separation and energy estimation are done.
Use case: Offer the possibility to cut a data set (meaning both, events and runs group) at any given point of the analysis chain.
For example, if you want to run a part of your analysis only on events of a certain zenith range, It makes sense to apply cuts to the data set in use accordingly, rather the providing each plotting or analysis function with the option to use a certain zd-range.
I guess this can either be a new script or a modification of apply cuts.
However, I think it is important that all data groups (events, runs) in the HDF files are cut.
Curious to hear your oppinon.