From 6aac39c52f85f3e31634538a3b892fe829b46fa5 Mon Sep 17 00:00:00 2001 From: Nenad Date: Sun, 22 Sep 2024 09:54:03 +0200 Subject: [PATCH 1/9] Rename proteins->polypeptide in protein-translation canonical-data.json --- .../protein-translation/canonical-data.json | 64 +++++++++---------- 1 file changed, 32 insertions(+), 32 deletions(-) diff --git a/exercises/protein-translation/canonical-data.json b/exercises/protein-translation/canonical-data.json index 1285da4402..6842ff9baa 100644 --- a/exercises/protein-translation/canonical-data.json +++ b/exercises/protein-translation/canonical-data.json @@ -3,12 +3,12 @@ "cases": [ { "uuid": "2c44f7bf-ba20-43f7-a3bf-f2219c0c3f98", - "description": "Empty RNA sequence results in no proteins", + "description": "Empty RNA sequence results in no amino acids", "comments": [ "Tracks may choose to expect an error when an empty RNA sequence ", "is given, or use this test to expect an empty result. " ], - "property": "proteins", + "property": "polypeptide", "input": { "strand": "" }, @@ -17,7 +17,7 @@ { "uuid": "96d3d44f-34a2-4db4-84cd-fff523e069be", "description": "Methionine RNA sequence", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "AUG" }, @@ -26,7 +26,7 @@ { "uuid": "1b4c56d8-d69f-44eb-be0e-7b17546143d9", "description": "Phenylalanine RNA sequence 1", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UUU" }, @@ -35,7 +35,7 @@ { "uuid": "81b53646-bd57-4732-b2cb-6b1880e36d11", "description": "Phenylalanine RNA sequence 2", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UUC" }, @@ -44,7 +44,7 @@ { "uuid": "42f69d4f-19d2-4d2c-a8b0-f0ae9ee1b6b4", "description": "Leucine RNA sequence 1", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UUA" }, @@ -53,7 +53,7 @@ { "uuid": "ac5edadd-08ed-40a3-b2b9-d82bb50424c4", "description": "Leucine RNA sequence 2", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UUG" }, @@ -62,7 +62,7 @@ { "uuid": "8bc36e22-f984-44c3-9f6b-ee5d4e73f120", "description": "Serine RNA sequence 1", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UCU" }, @@ -71,7 +71,7 @@ { "uuid": "5c3fa5da-4268-44e5-9f4b-f016ccf90131", "description": "Serine RNA sequence 2", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UCC" }, @@ -80,7 +80,7 @@ { "uuid": "00579891-b594-42b4-96dc-7ff8bf519606", "description": "Serine RNA sequence 3", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UCA" }, @@ -89,7 +89,7 @@ { "uuid": "08c61c3b-fa34-4950-8c4a-133945570ef6", "description": "Serine RNA sequence 4", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UCG" }, @@ -98,7 +98,7 @@ { "uuid": "54e1e7d8-63c0-456d-91d2-062c72f8eef5", "description": "Tyrosine RNA sequence 1", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UAU" }, @@ -107,7 +107,7 @@ { "uuid": "47bcfba2-9d72-46ad-bbce-22f7666b7eb1", "description": "Tyrosine RNA sequence 2", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UAC" }, @@ -116,7 +116,7 @@ { "uuid": "3a691829-fe72-43a7-8c8e-1bd083163f72", "description": "Cysteine RNA sequence 1", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UGU" }, @@ -125,7 +125,7 @@ { "uuid": "1b6f8a26-ca2f-43b8-8262-3ee446021767", "description": "Cysteine RNA sequence 2", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UGC" }, @@ -134,7 +134,7 @@ { "uuid": "1e91c1eb-02c0-48a0-9e35-168ad0cb5f39", "description": "Tryptophan RNA sequence", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UGG" }, @@ -143,7 +143,7 @@ { "uuid": "e547af0b-aeab-49c7-9f13-801773a73557", "description": "STOP codon RNA sequence 1", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UAA" }, @@ -152,7 +152,7 @@ { "uuid": "67640947-ff02-4f23-a2ef-816f8a2ba72e", "description": "STOP codon RNA sequence 2", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UAG" }, @@ -161,7 +161,7 @@ { "uuid": "9c2ad527-ebc9-4ace-808b-2b6447cb54cb", "description": "STOP codon RNA sequence 3", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UGA" }, @@ -170,7 +170,7 @@ { "uuid": "f4d9d8ee-00a8-47bf-a1e3-1641d4428e54", "description": "Sequence of two protein codons translates into proteins", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UUUUUU" }, @@ -182,7 +182,7 @@ "comments": [ "The codons are different, the proteins they translate into are not." ], - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UUAUUG" }, @@ -191,7 +191,7 @@ { "uuid": "d0f295df-fb70-425c-946c-ec2ec185388e", "description": "Translate RNA strand into correct protein list", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "AUGUUUUGG" }, @@ -200,7 +200,7 @@ { "uuid": "e30e8505-97ec-4e5f-a73e-5726a1faa1f4", "description": "Translation stops if STOP codon at beginning of sequence", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UAGUGG" }, @@ -209,7 +209,7 @@ { "uuid": "5358a20b-6f4c-4893-bce4-f929001710f3", "description": "Translation stops if STOP codon at end of two-codon sequence", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UGGUAG" }, @@ -218,7 +218,7 @@ { "uuid": "ba16703a-1a55-482f-bb07-b21eef5093a3", "description": "Translation stops if STOP codon at end of three-codon sequence", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "AUGUUUUAA" }, @@ -227,7 +227,7 @@ { "uuid": "4089bb5a-d5b4-4e71-b79e-b8d1f14a2911", "description": "Translation stops if STOP codon in middle of three-codon sequence", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UGGUAGUGG" }, @@ -236,7 +236,7 @@ { "uuid": "2c2a2a60-401f-4a80-b977-e0715b23b93d", "description": "Translation stops if STOP codon in middle of six-codon sequence", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UGGUGUUAUUAAUGGUUU" }, @@ -245,7 +245,7 @@ { "uuid": "f6f92714-769f-4187-9524-e353e8a41a80", "description": "Sequence of two non-STOP codons does not translate to a STOP codon", - "property": "proteins", + "property": "polypeptide", "input": { "strand": "AUGAUG" }, @@ -260,7 +260,7 @@ "order to remove the requirement for input validation. " ], "scenarios": ["input-validation"], - "property": "proteins", + "property": "polypeptide", "input": { "strand": "AAA" }, @@ -279,7 +279,7 @@ "order to remove the requirement for input validation. " ], "scenarios": ["input-validation"], - "property": "proteins", + "property": "polypeptide", "input": { "strand": "XYZ" }, @@ -296,7 +296,7 @@ "remove the requirement for input validation. " ], "scenarios": ["input-validation"], - "property": "proteins", + "property": "polypeptide", "input": { "strand": "AUGU" }, @@ -314,7 +314,7 @@ "it into proteins. " ], "scenarios": ["input-validation", "runtime-validation"], - "property": "proteins", + "property": "polypeptide", "input": { "strand": "UUCUUCUAAUGGU" }, From b70c903a6708c26856232457954a9b551b20ae19 Mon Sep 17 00:00:00 2001 From: Nenad Date: Sun, 22 Sep 2024 10:03:18 +0200 Subject: [PATCH 2/9] Update description.md --- exercises/protein-translation/description.md | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/exercises/protein-translation/description.md b/exercises/protein-translation/description.md index 0a33b31897..9c859aa022 100644 --- a/exercises/protein-translation/description.md +++ b/exercises/protein-translation/description.md @@ -9,13 +9,15 @@ RNA: `"AUGUUUUCU"` => translates to Codons: `"AUG", "UUU", "UCU"` => which become a polypeptide with the following sequence => -Protein: `"Methionine", "Phenylalanine", "Serine"` +Polypeptide: `"Methionine", "Phenylalanine", "Serine"` + +The polypeptide later folds into an active protein and performs its functions in the cell. There are 64 codons which in turn correspond to 20 amino acids; however, all of the codon sequences and resulting amino acids are not important in this exercise. If it works for one codon, the program should work for all of them. However, feel free to expand the list in the test suite to include them all. -There are also three terminating codons (also known as 'STOP' codons); if any of these codons are encountered (by the ribosome), all translation ends and the protein is terminated. +There are also three terminating codons (also known as 'STOP' codons); if any of these codons are encountered (by the ribosome), all translation ends and the polypeptide is terminated. All subsequent codons after are ignored, like this: @@ -23,13 +25,13 @@ RNA: `"AUGUUUUCUUAAAUG"` => Codons: `"AUG", "UUU", "UCU", "UAA", "AUG"` => -Protein: `"Methionine", "Phenylalanine", "Serine"` +Polypeptide: `"Methionine", "Phenylalanine", "Serine"` Note the stop codon `"UAA"` terminates the translation and the final methionine is not translated into the protein sequence. Below are the codons and resulting Amino Acids needed for the exercise. -| Codon | Protein | +| Codon | Amino Acid | | :----------------- | :------------ | | AUG | Methionine | | UUU, UUC | Phenylalanine | From 271d870a503d56d439544ca575d326bad82119fd Mon Sep 17 00:00:00 2001 From: Nenad Date: Sun, 22 Sep 2024 10:03:58 +0200 Subject: [PATCH 3/9] Revert polypeptide to protein --- .../protein-translation/canonical-data.json | 62 +++++++++---------- 1 file changed, 31 insertions(+), 31 deletions(-) diff --git a/exercises/protein-translation/canonical-data.json b/exercises/protein-translation/canonical-data.json index 6842ff9baa..1daa6d17b6 100644 --- a/exercises/protein-translation/canonical-data.json +++ b/exercises/protein-translation/canonical-data.json @@ -8,7 +8,7 @@ "Tracks may choose to expect an error when an empty RNA sequence ", "is given, or use this test to expect an empty result. " ], - "property": "polypeptide", + "property": "protein", "input": { "strand": "" }, @@ -17,7 +17,7 @@ { "uuid": "96d3d44f-34a2-4db4-84cd-fff523e069be", "description": "Methionine RNA sequence", - "property": "polypeptide", + "property": "protein", "input": { "strand": "AUG" }, @@ -26,7 +26,7 @@ { "uuid": "1b4c56d8-d69f-44eb-be0e-7b17546143d9", "description": "Phenylalanine RNA sequence 1", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UUU" }, @@ -35,7 +35,7 @@ { "uuid": "81b53646-bd57-4732-b2cb-6b1880e36d11", "description": "Phenylalanine RNA sequence 2", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UUC" }, @@ -44,7 +44,7 @@ { "uuid": "42f69d4f-19d2-4d2c-a8b0-f0ae9ee1b6b4", "description": "Leucine RNA sequence 1", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UUA" }, @@ -53,7 +53,7 @@ { "uuid": "ac5edadd-08ed-40a3-b2b9-d82bb50424c4", "description": "Leucine RNA sequence 2", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UUG" }, @@ -62,7 +62,7 @@ { "uuid": "8bc36e22-f984-44c3-9f6b-ee5d4e73f120", "description": "Serine RNA sequence 1", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UCU" }, @@ -71,7 +71,7 @@ { "uuid": "5c3fa5da-4268-44e5-9f4b-f016ccf90131", "description": "Serine RNA sequence 2", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UCC" }, @@ -80,7 +80,7 @@ { "uuid": "00579891-b594-42b4-96dc-7ff8bf519606", "description": "Serine RNA sequence 3", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UCA" }, @@ -89,7 +89,7 @@ { "uuid": "08c61c3b-fa34-4950-8c4a-133945570ef6", "description": "Serine RNA sequence 4", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UCG" }, @@ -98,7 +98,7 @@ { "uuid": "54e1e7d8-63c0-456d-91d2-062c72f8eef5", "description": "Tyrosine RNA sequence 1", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UAU" }, @@ -107,7 +107,7 @@ { "uuid": "47bcfba2-9d72-46ad-bbce-22f7666b7eb1", "description": "Tyrosine RNA sequence 2", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UAC" }, @@ -116,7 +116,7 @@ { "uuid": "3a691829-fe72-43a7-8c8e-1bd083163f72", "description": "Cysteine RNA sequence 1", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UGU" }, @@ -125,7 +125,7 @@ { "uuid": "1b6f8a26-ca2f-43b8-8262-3ee446021767", "description": "Cysteine RNA sequence 2", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UGC" }, @@ -134,7 +134,7 @@ { "uuid": "1e91c1eb-02c0-48a0-9e35-168ad0cb5f39", "description": "Tryptophan RNA sequence", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UGG" }, @@ -143,7 +143,7 @@ { "uuid": "e547af0b-aeab-49c7-9f13-801773a73557", "description": "STOP codon RNA sequence 1", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UAA" }, @@ -152,7 +152,7 @@ { "uuid": "67640947-ff02-4f23-a2ef-816f8a2ba72e", "description": "STOP codon RNA sequence 2", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UAG" }, @@ -161,7 +161,7 @@ { "uuid": "9c2ad527-ebc9-4ace-808b-2b6447cb54cb", "description": "STOP codon RNA sequence 3", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UGA" }, @@ -170,7 +170,7 @@ { "uuid": "f4d9d8ee-00a8-47bf-a1e3-1641d4428e54", "description": "Sequence of two protein codons translates into proteins", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UUUUUU" }, @@ -182,7 +182,7 @@ "comments": [ "The codons are different, the proteins they translate into are not." ], - "property": "polypeptide", + "property": "protein", "input": { "strand": "UUAUUG" }, @@ -191,7 +191,7 @@ { "uuid": "d0f295df-fb70-425c-946c-ec2ec185388e", "description": "Translate RNA strand into correct protein list", - "property": "polypeptide", + "property": "protein", "input": { "strand": "AUGUUUUGG" }, @@ -200,7 +200,7 @@ { "uuid": "e30e8505-97ec-4e5f-a73e-5726a1faa1f4", "description": "Translation stops if STOP codon at beginning of sequence", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UAGUGG" }, @@ -209,7 +209,7 @@ { "uuid": "5358a20b-6f4c-4893-bce4-f929001710f3", "description": "Translation stops if STOP codon at end of two-codon sequence", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UGGUAG" }, @@ -218,7 +218,7 @@ { "uuid": "ba16703a-1a55-482f-bb07-b21eef5093a3", "description": "Translation stops if STOP codon at end of three-codon sequence", - "property": "polypeptide", + "property": "protein", "input": { "strand": "AUGUUUUAA" }, @@ -227,7 +227,7 @@ { "uuid": "4089bb5a-d5b4-4e71-b79e-b8d1f14a2911", "description": "Translation stops if STOP codon in middle of three-codon sequence", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UGGUAGUGG" }, @@ -236,7 +236,7 @@ { "uuid": "2c2a2a60-401f-4a80-b977-e0715b23b93d", "description": "Translation stops if STOP codon in middle of six-codon sequence", - "property": "polypeptide", + "property": "protein", "input": { "strand": "UGGUGUUAUUAAUGGUUU" }, @@ -245,7 +245,7 @@ { "uuid": "f6f92714-769f-4187-9524-e353e8a41a80", "description": "Sequence of two non-STOP codons does not translate to a STOP codon", - "property": "polypeptide", + "property": "protein", "input": { "strand": "AUGAUG" }, @@ -260,7 +260,7 @@ "order to remove the requirement for input validation. " ], "scenarios": ["input-validation"], - "property": "polypeptide", + "property": "protein", "input": { "strand": "AAA" }, @@ -279,7 +279,7 @@ "order to remove the requirement for input validation. " ], "scenarios": ["input-validation"], - "property": "polypeptide", + "property": "protein", "input": { "strand": "XYZ" }, @@ -296,7 +296,7 @@ "remove the requirement for input validation. " ], "scenarios": ["input-validation"], - "property": "polypeptide", + "property": "protein", "input": { "strand": "AUGU" }, @@ -314,7 +314,7 @@ "it into proteins. " ], "scenarios": ["input-validation", "runtime-validation"], - "property": "polypeptide", + "property": "protein", "input": { "strand": "UUCUUCUAAUGGU" }, From a82e2a57583a351e82481fb66c32c208f9f2f3b0 Mon Sep 17 00:00:00 2001 From: Nenad Date: Mon, 23 Sep 2024 09:44:36 +0200 Subject: [PATCH 4/9] Update canonical-data.json: "protein"->"proteins" --- .../protein-translation/canonical-data.json | 62 +++++++++---------- 1 file changed, 31 insertions(+), 31 deletions(-) diff --git a/exercises/protein-translation/canonical-data.json b/exercises/protein-translation/canonical-data.json index 1daa6d17b6..73daad70ed 100644 --- a/exercises/protein-translation/canonical-data.json +++ b/exercises/protein-translation/canonical-data.json @@ -8,7 +8,7 @@ "Tracks may choose to expect an error when an empty RNA sequence ", "is given, or use this test to expect an empty result. " ], - "property": "protein", + "property": "proteins", "input": { "strand": "" }, @@ -17,7 +17,7 @@ { "uuid": "96d3d44f-34a2-4db4-84cd-fff523e069be", "description": "Methionine RNA sequence", - "property": "protein", + "property": "proteins", "input": { "strand": "AUG" }, @@ -26,7 +26,7 @@ { "uuid": "1b4c56d8-d69f-44eb-be0e-7b17546143d9", "description": "Phenylalanine RNA sequence 1", - "property": "protein", + "property": "proteins", "input": { "strand": "UUU" }, @@ -35,7 +35,7 @@ { "uuid": "81b53646-bd57-4732-b2cb-6b1880e36d11", "description": "Phenylalanine RNA sequence 2", - "property": "protein", + "property": "proteins", "input": { "strand": "UUC" }, @@ -44,7 +44,7 @@ { "uuid": "42f69d4f-19d2-4d2c-a8b0-f0ae9ee1b6b4", "description": "Leucine RNA sequence 1", - "property": "protein", + "property": "proteins", "input": { "strand": "UUA" }, @@ -53,7 +53,7 @@ { "uuid": "ac5edadd-08ed-40a3-b2b9-d82bb50424c4", "description": "Leucine RNA sequence 2", - "property": "protein", + "property": "proteins", "input": { "strand": "UUG" }, @@ -62,7 +62,7 @@ { "uuid": "8bc36e22-f984-44c3-9f6b-ee5d4e73f120", "description": "Serine RNA sequence 1", - "property": "protein", + "property": "proteins", "input": { "strand": "UCU" }, @@ -71,7 +71,7 @@ { "uuid": "5c3fa5da-4268-44e5-9f4b-f016ccf90131", "description": "Serine RNA sequence 2", - "property": "protein", + "property": "proteins", "input": { "strand": "UCC" }, @@ -80,7 +80,7 @@ { "uuid": "00579891-b594-42b4-96dc-7ff8bf519606", "description": "Serine RNA sequence 3", - "property": "protein", + "property": "proteins", "input": { "strand": "UCA" }, @@ -89,7 +89,7 @@ { "uuid": "08c61c3b-fa34-4950-8c4a-133945570ef6", "description": "Serine RNA sequence 4", - "property": "protein", + "property": "proteins", "input": { "strand": "UCG" }, @@ -98,7 +98,7 @@ { "uuid": "54e1e7d8-63c0-456d-91d2-062c72f8eef5", "description": "Tyrosine RNA sequence 1", - "property": "protein", + "property": "proteins", "input": { "strand": "UAU" }, @@ -107,7 +107,7 @@ { "uuid": "47bcfba2-9d72-46ad-bbce-22f7666b7eb1", "description": "Tyrosine RNA sequence 2", - "property": "protein", + "property": "proteins", "input": { "strand": "UAC" }, @@ -116,7 +116,7 @@ { "uuid": "3a691829-fe72-43a7-8c8e-1bd083163f72", "description": "Cysteine RNA sequence 1", - "property": "protein", + "property": "proteins", "input": { "strand": "UGU" }, @@ -125,7 +125,7 @@ { "uuid": "1b6f8a26-ca2f-43b8-8262-3ee446021767", "description": "Cysteine RNA sequence 2", - "property": "protein", + "property": "proteins", "input": { "strand": "UGC" }, @@ -134,7 +134,7 @@ { "uuid": "1e91c1eb-02c0-48a0-9e35-168ad0cb5f39", "description": "Tryptophan RNA sequence", - "property": "protein", + "property": "proteins", "input": { "strand": "UGG" }, @@ -143,7 +143,7 @@ { "uuid": "e547af0b-aeab-49c7-9f13-801773a73557", "description": "STOP codon RNA sequence 1", - "property": "protein", + "property": "proteins", "input": { "strand": "UAA" }, @@ -152,7 +152,7 @@ { "uuid": "67640947-ff02-4f23-a2ef-816f8a2ba72e", "description": "STOP codon RNA sequence 2", - "property": "protein", + "property": "proteins", "input": { "strand": "UAG" }, @@ -161,7 +161,7 @@ { "uuid": "9c2ad527-ebc9-4ace-808b-2b6447cb54cb", "description": "STOP codon RNA sequence 3", - "property": "protein", + "property": "proteins", "input": { "strand": "UGA" }, @@ -170,7 +170,7 @@ { "uuid": "f4d9d8ee-00a8-47bf-a1e3-1641d4428e54", "description": "Sequence of two protein codons translates into proteins", - "property": "protein", + "property": "proteins", "input": { "strand": "UUUUUU" }, @@ -182,7 +182,7 @@ "comments": [ "The codons are different, the proteins they translate into are not." ], - "property": "protein", + "property": "proteins", "input": { "strand": "UUAUUG" }, @@ -191,7 +191,7 @@ { "uuid": "d0f295df-fb70-425c-946c-ec2ec185388e", "description": "Translate RNA strand into correct protein list", - "property": "protein", + "property": "proteins", "input": { "strand": "AUGUUUUGG" }, @@ -200,7 +200,7 @@ { "uuid": "e30e8505-97ec-4e5f-a73e-5726a1faa1f4", "description": "Translation stops if STOP codon at beginning of sequence", - "property": "protein", + "property": "proteins", "input": { "strand": "UAGUGG" }, @@ -209,7 +209,7 @@ { "uuid": "5358a20b-6f4c-4893-bce4-f929001710f3", "description": "Translation stops if STOP codon at end of two-codon sequence", - "property": "protein", + "property": "proteins", "input": { "strand": "UGGUAG" }, @@ -218,7 +218,7 @@ { "uuid": "ba16703a-1a55-482f-bb07-b21eef5093a3", "description": "Translation stops if STOP codon at end of three-codon sequence", - "property": "protein", + "property": "proteins", "input": { "strand": "AUGUUUUAA" }, @@ -227,7 +227,7 @@ { "uuid": "4089bb5a-d5b4-4e71-b79e-b8d1f14a2911", "description": "Translation stops if STOP codon in middle of three-codon sequence", - "property": "protein", + "property": "proteins", "input": { "strand": "UGGUAGUGG" }, @@ -236,7 +236,7 @@ { "uuid": "2c2a2a60-401f-4a80-b977-e0715b23b93d", "description": "Translation stops if STOP codon in middle of six-codon sequence", - "property": "protein", + "property": "proteins", "input": { "strand": "UGGUGUUAUUAAUGGUUU" }, @@ -245,7 +245,7 @@ { "uuid": "f6f92714-769f-4187-9524-e353e8a41a80", "description": "Sequence of two non-STOP codons does not translate to a STOP codon", - "property": "protein", + "property": "proteins", "input": { "strand": "AUGAUG" }, @@ -260,7 +260,7 @@ "order to remove the requirement for input validation. " ], "scenarios": ["input-validation"], - "property": "protein", + "property": "proteins", "input": { "strand": "AAA" }, @@ -279,7 +279,7 @@ "order to remove the requirement for input validation. " ], "scenarios": ["input-validation"], - "property": "protein", + "property": "proteins", "input": { "strand": "XYZ" }, @@ -296,7 +296,7 @@ "remove the requirement for input validation. " ], "scenarios": ["input-validation"], - "property": "protein", + "property": "proteins", "input": { "strand": "AUGU" }, @@ -314,7 +314,7 @@ "it into proteins. " ], "scenarios": ["input-validation", "runtime-validation"], - "property": "protein", + "property": "proteins", "input": { "strand": "UUCUUCUAAUGGU" }, From 0935ddee197446e818ffe98d5f1ac85c06204eda Mon Sep 17 00:00:00 2001 From: Nenad Date: Tue, 24 Sep 2024 16:21:44 +0200 Subject: [PATCH 5/9] Revert canonical-data.json --- exercises/protein-translation/canonical-data.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/exercises/protein-translation/canonical-data.json b/exercises/protein-translation/canonical-data.json index 73daad70ed..1285da4402 100644 --- a/exercises/protein-translation/canonical-data.json +++ b/exercises/protein-translation/canonical-data.json @@ -3,7 +3,7 @@ "cases": [ { "uuid": "2c44f7bf-ba20-43f7-a3bf-f2219c0c3f98", - "description": "Empty RNA sequence results in no amino acids", + "description": "Empty RNA sequence results in no proteins", "comments": [ "Tracks may choose to expect an error when an empty RNA sequence ", "is given, or use this test to expect an empty result. " From 7ea760c3f83cd2f20e4e8e3683a5f645b7af327b Mon Sep 17 00:00:00 2001 From: Nenad Date: Tue, 24 Sep 2024 16:23:33 +0200 Subject: [PATCH 6/9] Update description.md --- exercises/protein-translation/description.md | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/exercises/protein-translation/description.md b/exercises/protein-translation/description.md index 9c859aa022..a4769837ef 100644 --- a/exercises/protein-translation/description.md +++ b/exercises/protein-translation/description.md @@ -9,15 +9,13 @@ RNA: `"AUGUUUUCU"` => translates to Codons: `"AUG", "UUU", "UCU"` => which become a polypeptide with the following sequence => -Polypeptide: `"Methionine", "Phenylalanine", "Serine"` - -The polypeptide later folds into an active protein and performs its functions in the cell. +Protein: `"Methionine", "Phenylalanine", "Serine"` There are 64 codons which in turn correspond to 20 amino acids; however, all of the codon sequences and resulting amino acids are not important in this exercise. If it works for one codon, the program should work for all of them. However, feel free to expand the list in the test suite to include them all. -There are also three terminating codons (also known as 'STOP' codons); if any of these codons are encountered (by the ribosome), all translation ends and the polypeptide is terminated. +There are also three terminating codons (also known as 'STOP' codons); if any of these codons are encountered (by the ribosome), all translation ends and the protein is terminated. All subsequent codons after are ignored, like this: @@ -25,7 +23,7 @@ RNA: `"AUGUUUUCUUAAAUG"` => Codons: `"AUG", "UUU", "UCU", "UAA", "AUG"` => -Polypeptide: `"Methionine", "Phenylalanine", "Serine"` +Protein: `"Methionine", "Phenylalanine", "Serine"` Note the stop codon `"UAA"` terminates the translation and the final methionine is not translated into the protein sequence. From e335c63c0f333c397ef65c004c15619c1f800ab8 Mon Sep 17 00:00:00 2001 From: Nenad Date: Mon, 30 Sep 2024 15:47:01 +0200 Subject: [PATCH 7/9] Switch all "polypeptide" mentions to "protein" --- exercises/protein-translation/description.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/exercises/protein-translation/description.md b/exercises/protein-translation/description.md index a4769837ef..858c78f9a1 100644 --- a/exercises/protein-translation/description.md +++ b/exercises/protein-translation/description.md @@ -2,12 +2,12 @@ Translate RNA sequences into proteins. -RNA can be broken into three nucleotide sequences called codons, and then translated to a polypeptide like so: +RNA can be broken into three nucleotide sequences called codons, and then translated to a protein like so: RNA: `"AUGUUUUCU"` => translates to Codons: `"AUG", "UUU", "UCU"` -=> which become a polypeptide with the following sequence => +=> which become a protein with the following sequence => Protein: `"Methionine", "Phenylalanine", "Serine"` From c317ea01960c0e3a6036f8ec6c43af735aa2272b Mon Sep 17 00:00:00 2001 From: Nenad Date: Mon, 30 Sep 2024 15:48:09 +0200 Subject: [PATCH 8/9] hyphenate "three nucleotide" --- exercises/protein-translation/description.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/exercises/protein-translation/description.md b/exercises/protein-translation/description.md index 858c78f9a1..1428914699 100644 --- a/exercises/protein-translation/description.md +++ b/exercises/protein-translation/description.md @@ -2,7 +2,7 @@ Translate RNA sequences into proteins. -RNA can be broken into three nucleotide sequences called codons, and then translated to a protein like so: +RNA can be broken into three-nucleotide sequences called codons, and then translated to a protein like so: RNA: `"AUGUUUUCU"` => translates to From 44beea81292299f027da0ff0b1d36e79aae78db9 Mon Sep 17 00:00:00 2001 From: Cool-Katt Date: Mon, 30 Sep 2024 18:06:44 +0300 Subject: [PATCH 9/9] Update exercises/protein-translation/description.md MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit As suggested by @BNAndras Co-authored-by: András B Nagy <20251272+BNAndras@users.noreply.github.com> --- exercises/protein-translation/description.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/exercises/protein-translation/description.md b/exercises/protein-translation/description.md index 1428914699..dc9209269c 100644 --- a/exercises/protein-translation/description.md +++ b/exercises/protein-translation/description.md @@ -27,7 +27,7 @@ Protein: `"Methionine", "Phenylalanine", "Serine"` Note the stop codon `"UAA"` terminates the translation and the final methionine is not translated into the protein sequence. -Below are the codons and resulting Amino Acids needed for the exercise. +Below are the codons and resulting amino acids needed for the exercise. | Codon | Amino Acid | | :----------------- | :------------ |