gfak::mmap_open opens O_RDWR

[tetron]

gfak::mmap_open calls open with O_RDWR (read/write access). This fails with a cryptic error when the file is read-only:

odgi: /app/odgi/deps/gfakluge/src/gfakluge.hpp:569: size_t gfak::mmap_open(const string&, char*&, int&): Assertion `false' failed.

[tetron]

The workaround is to make the file writable (but this entails making a copy of the whole file in my case).

[ekg]

Yeah we should just patch this. It's not a problem.

…

On Tue, Apr 7, 2020 at 4:05 PM Peter Amstutz ***@***.***> wrote: The workaround is to make the file writable (but this entails making a copy of the whole file in my case). — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#65 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AABDQEJ6G6LFVUPEUZWRIJLRLMXLVANCNFSM4MDESFGA> .