From e1b706cf9072de7d300d0efeae420e3e092765a1 Mon Sep 17 00:00:00 2001
From: Quentin Nater <quentin.nater@gmail.com>
Date: Thu, 20 Mar 2025 16:52:14 +0100
Subject: [PATCH] release 01b - documentation and updates

---
 README.md                         | 29 ++++++++++++++---------------
 docs/generation/source/conf.py    |  4 ++--
 imputegap/__init__.py             |  2 +-
 imputegap/runner_contamination.py |  2 +-
 setup.py                          |  2 +-
 5 files changed, 19 insertions(+), 20 deletions(-)

diff --git a/README.md b/README.md
index ca7cbe28..8dff3735 100644
--- a/README.md
+++ b/README.md
@@ -20,7 +20,7 @@ Access to commonly used datasets in time series research (Datasets).
 <br>
 
 ![Python](https://img.shields.io/badge/Python-v3.12-blue) 
-![Release](https://img.shields.io/badge/Release-v1.0.5-brightgreen) 
+![Release](https://img.shields.io/badge/Release-v1.0.6-brightgreen) 
 ![License](https://img.shields.io/badge/License-GPLv3-blue?style=flat&logo=gnu)
 ![Coverage](https://img.shields.io/badge/Coverage-93%25-brightgreen)
 ![PyPI](https://img.shields.io/pypi/v/imputegap?label=PyPI&color=blue)
@@ -161,10 +161,10 @@ ts.print(nbr_series=9, nbr_val=100)
 ---
 
 ## Contamination
-We now describe how to simulate missing values in the loaded dataset. ImputeGAP implements eight different missingness patterns. The list of patterns is described [here](https://imputegap.readthedocs.io/en/latest/patterns.html).
+We now describe how to simulate missing values in the loaded dataset. ImputeGAP implements eight different missingness patterns.
 
 
-For more details, please refer to the documentation in this <a href="https://imputegap.readthedocs.io/en/latest/patterns.html" >page</a>.
+For more details, please refer to the documentation in this [page](https://imputegap.readthedocs.io/en/latest/patterns.html).
 <br></br>
 
 ### Example Contamination
@@ -425,18 +425,17 @@ Mourad Khayati, Quentin Nater, Jacques Pasquier: ImputeVIS: An Interactive Evalu
 
 If you use ImputeGAP in your research, please cite the paper:
 
-.. code-block:: bash
-
-    @article{nater2025imputegap,
-      title = {ImputeGAP: A Comprehensive Library for Time Series Imputation},
-      author = {Nater, Quentin and Khayati, Mourad and Pasquier, Jacques},
-      year = {2025},
-      eprint = {2503.15250},
-      archiveprefix = {arXiv},
-      primaryclass = {cs.LG},
-      url = {https://arxiv.org/abs/2503.15250}
-    }
-
+```
+@article{nater2025imputegap,
+  title = {ImputeGAP: A Comprehensive Library for Time Series Imputation},
+  author = {Nater, Quentin and Khayati, Mourad and Pasquier, Jacques},
+  year = {2025},
+  eprint = {2503.15250},
+  archiveprefix = {arXiv},
+  primaryclass = {cs.LG},
+  url = {https://arxiv.org/abs/2503.15250}
+}
+```
 ---
 
 ## Core Contributors
diff --git a/docs/generation/source/conf.py b/docs/generation/source/conf.py
index 27eabb59..7d915772 100644
--- a/docs/generation/source/conf.py
+++ b/docs/generation/source/conf.py
@@ -46,8 +46,8 @@
 html_css_files = ['custom.css']
 
 # Set the version and release info
-version = '1.0.5'
-release = '1.0.5'
+version = '1.0.6'
+release = '1.0.6'
 
 
 html_theme_options = {
diff --git a/imputegap/__init__.py b/imputegap/__init__.py
index 222a4c12..010279ae 100644
--- a/imputegap/__init__.py
+++ b/imputegap/__init__.py
@@ -1 +1 @@
-__version__ = "1.0.5"
\ No newline at end of file
+__version__ = "1.0.6"
\ No newline at end of file
diff --git a/imputegap/runner_contamination.py b/imputegap/runner_contamination.py
index 9faaa7f6..cd9ec977 100644
--- a/imputegap/runner_contamination.py
+++ b/imputegap/runner_contamination.py
@@ -10,7 +10,7 @@
 ts.normalize(normalizer="z_score")
 
 # contaminate the time series with MCAR pattern
-ts_m = ts.Contamination.overlap(ts.data, rate_series=0.1, limit=1, shift=0.05, offset=0.1)
+ts_m = ts.Contamination.mcar(ts.data, rate_dataset=0.2, rate_series=0.4, block_size=10, seed=True)
 
 # plot the contaminated time series
 ts.plot(ts.data, ts_m, nbr_series=9, subplot=True, save_path="./imputegap_assets")
\ No newline at end of file
diff --git a/setup.py b/setup.py
index 0b516b2c..618c9b84 100644
--- a/setup.py
+++ b/setup.py
@@ -4,7 +4,7 @@
 
 setuptools.setup(
     name="imputegap",
-    version="1.0.5",
+    version="1.0.6",
     description="A Library of Imputation Techniques for Time Series Data",
     long_description=open('README.md').read(),
     long_description_content_type="text/markdown",