PDB2Vector not working

[JacopoGabrielli]

I was trying to get a vectorised image for a few protein structures on the PDB, and, after fetching them, when I click vectorise with contour or 3D, it gets stuck in the loading screen and runs forever. That doesn't happen when style is Flat.

[duerrsimon]

Can you provide some examples to debug this?

[JacopoGabrielli]

[image: c33ca4b1-24d1-4128-88b7-4391909b4e35.png] Flat and working. [image: image.png] Stuck while vectorising with style = Contour.

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On Tue, 18 Mar 2025 at 13:33, Simon Duerr ***@***.***> wrote: Can you provide some examples to debug this? — Reply to this email directly, view it on GitHub <#265 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AJUXHIG7FMY6WYVBE7UMF4T2VAOBHAVCNFSM6AAAAABZH4N6POVHI2DSMVQWIX3LMV43URDJONRXK43TNFXW4Q3PNVWWK3TUHMYTENJTHA3TONQ> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[duerrsimon]

I don't see the images and I also need a PDB file to actually debug. I don't track what users upload.

[JacopoGabrielli]

Ah sorry about that. 2Y0G is the pdb identifier I used to fetch the file from bioicons. It's enhanced green fluorescent protein. I attached the images now, hope that works. Thanks!

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On Tue, 18 Mar 2025, 14:50 Simon Duerr, ***@***.***> wrote: I don't see the images and I also need a PDB file to actually debug. I don't track what users upload. — Reply to this email directly, view it on GitHub <#265 (reply in thread)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AJUXHIB7BNU26JNDAKG55CL2VAXCDAVCNFSM6AAAAABZH4N6POVHI2DSMVQWIX3LMV43URDJONRXK43TNFXW4Q3PNVWWK3TUHMYTENJTHE3TQOA> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[duerrsimon]

If I fetch the file 2Y0G from the PDB it works for me. Can you attach the PDB file you're working with?

[JacopoGabrielli]

Odd. I am not working with a PDB file I downloaded, I fetch it within bioicon by entering the PDB ID. For context, I am using Google Chrome and am based in the UK.

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On Tue, 18 Mar 2025 at 15:05, Simon Duerr ***@***.***> wrote: If I fetch the file 2Y0G from the PDB it works for me. Can you attach the PDB file you're working with? image.png (view on web) <https://github.com/user-attachments/assets/0ad287d5-d858-44fb-9236-b69042f7e1af> — Reply to this email directly, view it on GitHub <#265 (reply in thread)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AJUXHIDU6JG3ZNLZKOWITLD2VAY2HAVCNFSM6AAAAABZH4N6POVHI2DSMVQWIX3LMV43URDJONRXK43TNFXW4Q3PNVWWK3TUHMYTENJUGAYDANA> . You are receiving this because you authored the thread.Message ID: ***@***.***>