Fixes for various warnings appearing in examples (part 2) (pyg-team#10370)

Follow-up to
[PR#10357](pyg-team#10357) to
address and resolve the following remaining warning:
```
  test/datasets/test_snap_dataset.py::test_ego_facebook_snap_dataset /usr/local/lib/python3.12/dist-packages/torch_geometric/data/in_memory_dataset.py:131: 
UserWarning: Weights only load failed. Please file an issue to make torch.load(weights_only=True) compatible 
in your case. Please use torch.serialization.add_safe_globals([torch_geometric.datasets.snap_dataset.EgoData]) 
to allowlist this global. out = fs.torch_load(path)  
```

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Rishi Puri <riship@nvidia.com>

Author: 3 people

.github/workflows/linting.yml

@@ -46,8 +46,9 @@ jobs:
         run: |
           uv pip install mypy
           uv pip install -e ".[full,test]"
+          uv pip install types-requests
 
       - name: Check type hints
         if: steps.changed-files-specific.outputs.only_changed != 'true'
         run: |
-          uv run --no-project mypy
+          uv run --no-project mypy --cache-dir=/dev/null

CHANGELOG.md

@@ -5,6 +5,10 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 
 ## [2.7.0] - 2025-MM-DD
 
+### Fixed
+
+- Fix `detach()` warnings in example scripts involving tensor conversions. ([#10357](https://github.com/pyg-team/pytorch_geometric/pull/10357))
+
 ### Added
 
 - Added `Polynormer` model and example ([#9908](https://github.com/pyg-team/pytorch_geometric/pull/9908))

docs/source/conf.py

@@ -42,7 +42,7 @@
 intersphinx_mapping = {
     'python': ('https://docs.python.org/', None),
     # 'numpy': ('http://docs.scipy.org/doc/numpy', None),
-    'pandas': ('http://pandas.pydata.org/pandas-docs/dev', None),
+    'pandas': ('http://pandas.pydata.org/pandas-docs/stable', None),
     'torch': ('https://pytorch.org/docs/main', None),
 }
 

test/datasets/test_snap_dataset.py

@@ -4,6 +4,27 @@
 @onlyOnline
 @onlyFullTest
 def test_ego_facebook_snap_dataset(get_dataset):
+    import warnings
+
+    import torch
+    from packaging import version
+
+    if version.parse(torch.__version__) >= version.parse("2.2.0"):
+        try:
+            from torch.serialization import add_safe_globals
+
+            from torch_geometric.datasets.snap_dataset import EgoData
+
+            add_safe_globals([EgoData])
+        except ImportError:
+            warnings.warn(
+                "add_safe_globals is expected but not found in "
+                "torch.serialization.", stacklevel=2)
+    else:
+        warnings.warn(
+            "add_safe_globals is not available in this version "
+            "of PyTorch; continuing without it.", stacklevel=2)
+
     dataset = get_dataset(name='ego-facebook')
     assert str(dataset) == 'SNAP-ego-facebook(10)'
     assert len(dataset) == 10

torch_geometric/data/extract.py

@@ -28,7 +28,7 @@ def extract_tar(
     """
     maybe_log(path, log)
     with tarfile.open(path, mode) as f:
-        f.extractall(folder)
+        f.extractall(folder, filter='data')
 
 
 def extract_zip(path: str, folder: str, log: bool = True) -> None: