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Hi Uni-pKa team,
Thanks for making the useful pKa prediction tool available. I have noticed an issue with the Notebook published here (https://bohrium.dp.tech/notebooks/38543442597).
For some of the molecule in my dataset for pKa prediction the following lines get stuck in the infinite loop.
drug_ensemble = get_ensemble(smi_drug, template_a2b_full, template_b2a_full)
for example the SMILES smi_drug = "COC1=CC=C(C=C1)C1=NN=C(O1)C(=O)N1CC(C1)OC1=CC=C(CN2CCCC2)C=C1"
Any idea how to resolve it?
Best,
Bilal
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