Packages produced by input repos are missing from VMR manifest

[wtgodbe]

This is the set of packages that are produced by input repos that do not show up in the VMR manifest:

https://gist.github.com/wtgodbe/04496a9368c7b23e291b6ad2c730c0a2

2/11 update: https://gist.github.com/wtgodbe/d2b4e9e7c15c200301c703a49d662b9a

[mmitche]

Closing in favor of results from recent build.