/bin/cgHap2MHBs_parallel.pl

[qinzhang0824]

Hi dinhdiep,
I want to use your method to generate methylation haplotype blocks.
When running your script for Identifying the methylation haplotype blocks:
/bin/cgHap2MHBs_parallel.pl [hapInfo file] [min R2] [snpBed file] [outPrefix] ，what's type file "[snpBed file]" should be given ? It is the files in "data" folder named snp138_part_.gz ? I have tried used those snp138_part_.gz files, but couldn't got the expected results , what's the potential problem ?Can you help me address this problem? Thank you very much!
Best wishes!

[eggland123]

The same problem. What is the snpBedFile, which is not mentioned in the description? @dinhdiep

Thank you so much!

[hmyh1202]

May be the genome cov bed file.