This error occurs when I am running dpgen in bohrium #1211
Unanswered
1119609754
asked this question in
Q&A
Replies: 1 comment
-
Please contact bohrium directly. The error is not caused by the code. |
Beta Was this translation helpful? Give feedback.
0 replies
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Uh oh!
There was an error while loading. Please reload this page.
-
The following error occurs when I run to phase 01.model devi,I don't know how to fix this.
error:
nohup: ignoring input
/opt/mamba/lib/python3.10/site-packages/gromacs/init.py:286: GromacsImportWarning: Some Gromacs commands were NOT found; maybe source GMXRC first? The following are missing:
['release']
warnings.warn("Some Gromacs commands were NOT found; "
INFO:dpgen:-------------------------iter.000000 task 01--------------------------
INFO:dpgen:-------------------------iter.000000 task 02--------------------------
INFO:dpgen:-------------------------iter.000000 task 03--------------------------
INFO:dpgen:-------------------------iter.000000 task 04--------------------------
Traceback (most recent call last):
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/submission.py", line 287, in handle_unexpected_submission_state
job.handle_unexpected_job_state()
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/submission.py", line 755, in handle_unexpected_job_state
self.submit_job()
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/submission.py", line 802, in submit_job
job_id = self.machine.do_submit(self)
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/dp_cloud_server.py", line 120, in do_submit
job_id, group_id = self.api.job_create(
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/dpcloudserver/client.py", line 227, in job_create
ret = self.post("/brm/v2/job/add", camel_data)
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/dpcloudserver/client.py", line 40, in post
return self._req(
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/dpcloudserver/client.py", line 85, in _req
raise RequestInfoException(resp_code, short_url, err)
dpdispatcher.dpcloudserver.client.RequestInfoException: (200, '/brm/v2/job/add', {'title': '请求错误', 'msg': 'sqlalchemy.exc.DataError: [9h9h] (1406, "Data too long for column 'out_files' at row 1")', 'reference': ''})
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/opt/mamba/bin/dpgen", line 8, in
sys.exit(main())
File "/opt/mamba/lib/python3.10/site-packages/dpgen/main.py", line 185, in main
args.func(args)
File "/opt/mamba/lib/python3.10/site-packages/dpgen/generator/run.py", line 3642, in gen_run
run_iter (args.PARAM, args.MACHINE)
File "/opt/mamba/lib/python3.10/site-packages/dpgen/generator/run.py", line 3618, in run_iter
run_model_devi (ii, jdata, mdata)
File "/opt/mamba/lib/python3.10/site-packages/dpgen/generator/run.py", line 1556, in run_model_devi
run_md_model_devi(iter_index,jdata,mdata)
File "/opt/mamba/lib/python3.10/site-packages/dpgen/generator/run.py", line 1550, in run_md_model_devi
submission.run_submission()
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/submission.py", line 224, in run_submission
self.handle_unexpected_submission_state()
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/submission.py", line 290, in handle_unexpected_submission_state
raise RuntimeError(
RuntimeError: Meet errors will handle unexpected submission state.
Debug information: remote_root==..
Debug information: submission_hash==5f74604d22a60f969008f382f68a69da22c02ec9.
Please check the dirs and scripts in remote_root. The job information mentioned above may help.
Beta Was this translation helpful? Give feedback.
All reactions