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Thinh Nguyen
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Update kilosort_triggering.py
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element_array_ephys/readers/kilosort_triggering.py

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@@ -303,7 +303,9 @@ class OpenEphysKilosortPipeline:
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https://github.com/AllenInstitute/ecephys_spike_sorting
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"""
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_modules = ['kilosort_helper',
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_modules = ['depth_estimation',
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'median_subtraction',
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'kilosort_helper',
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'kilosort_postprocessing',
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'noise_templates',
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'mean_waveforms',
@@ -477,7 +479,7 @@ def _update_total_duration(self):
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def run_pykilosort(continuous_file, kilosort_output_directory, params,
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channel_ind, x_coords, y_coords, shank_ind, connected, sample_rate):
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channel_ind, x_coords, y_coords, shank_ind, connected, sample_rate):
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dat_path = pathlib.Path(continuous_file)
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probe = pykilosort.Bunch()

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