Merge pull request #192 from ttngu207/dev_spikeinterface_v101

fix: use relative path for phy output

Author: MilagrosMarin

element_array_ephys/ephys_no_curation.py

@@ -1045,7 +1045,7 @@ def make(self, key):
             # Find representative channel for each unit
             unit_peak_channel: dict[int, np.ndarray] = (
                 si.ChannelSparsity.from_best_channels(
-                    sorting_analyzer, 1, peak_sign="neg"
+                    sorting_analyzer, 1, peak_sign="both"
                 ).unit_id_to_channel_indices
             )
             unit_peak_channel: dict[int, int] = {u: chn[0] for u, chn in unit_peak_channel.items()}
@@ -1249,7 +1249,7 @@ def make(self, key):
             # Find representative channel for each unit
             unit_peak_channel: dict[int, np.ndarray] = (
                 si.ChannelSparsity.from_best_channels(
-                    sorting_analyzer, 1, peak_sign="neg"
+                    sorting_analyzer, 1, peak_sign="both"
                 ).unit_id_to_channel_indices
             )  # {unit: peak_channel_index}
             unit_peak_channel = {u: chn[0] for u, chn in unit_peak_channel.items()}

element_array_ephys/spike_sorting/si_spike_sorting.py

@@ -301,6 +301,7 @@ def _sorting_analyzer_compute():
                 si.exporters.export_to_phy(
                     sorting_analyzer=sorting_analyzer,
                     output_folder=analyzer_output_dir / "phy",
+                    use_relative_path=True,
                     **job_kwargs,
                 )
             # Generate spike interface report