fix(spikeglx): bugfix loading spikeglx data

Author: ttngu207

element_array_ephys/ephys_no_curation.py

@@ -338,8 +338,15 @@ def make(self, key):
         supported_probe_types = probe.ProbeType.fetch("probe_type")
 
         if acq_software == "SpikeGLX":
-            spikeglx_meta_filepath = get_spikeglx_meta_filepath(key)
-            spikeglx_meta = spikeglx.SpikeGLXMeta(spikeglx_meta_filepath)
+            for meta_filepath in ephys_meta_filepaths:
+                spikeglx_meta = spikeglx.SpikeGLXMeta(meta_filepath)
+                if str(spikeglx_meta.probe_SN) == inserted_probe_serial_number:
+                    spikeglx_meta_filepath = meta_filepath
+                    break
+            else:
+                raise FileNotFoundError(
+                    "No SpikeGLX data found for probe insertion: {}".format(key)
+                )
 
             if spikeglx_meta.probe_model not in supported_probe_types:
                 raise NotImplementedError(

element_array_ephys/spike_sorting/si_spike_sorting.py

@@ -117,10 +117,13 @@ def make(self, key):
             assert len(oe_probe.recording_info["recording_files"]) == 1
             data_dir = oe_probe.recording_info["recording_files"][0]
         else:
-            acq_software = acq_software.replace(" ", "").lower()
-            si_extractor: si.extractors.neoextractors = (
-                si.extractors.extractorlist.recording_extractor_full_dict[acq_software]
-            )  # data extractor object
+            raise NotImplementedError(
+                f"SpikeInterface processing for {acq_software} not yet implemented."
+            )
+        acq_software = acq_software.replace(" ", "").lower()
+        si_extractor: si.extractors.neoextractors = (
+            si.extractors.extractorlist.recording_extractor_full_dict[acq_software]
+        )  # data extractor object
 
         stream_names, stream_ids = si.extractors.get_neo_streams(
             acq_software, folder_path=data_dir