@@ -70,47 +70,47 @@ Each of the DataJoint Elements creates a set of tables for common neuroscience d
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### ` subject ` schema ([ API docs] ( https://datajoint.com/docs/elements/element-animal/api/element_animal/subject ) )
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- Although not required, most choose to connect the ` Session ` table to a ` Subject ` table.
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- | Table | Description |
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- | ------- | ---------------------------------------------------------- --- |
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+ | Table | Description |
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+ | --- | --- |
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| Subject | A table containing basic information of the research subject. |
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### ` session ` schema ([ API docs] ( https://datajoint.com/docs/elements/element-session/api/element_session/session_with_datetime ) )
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- | Table | Description |
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- | ------- | ------------------------------------------------- --- |
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+ | Table | Description |
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+ | --- | --- |
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| Session | A table for unique experimental session identifiers. |
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### ` probe ` schema ([ API docs] ( ../api/element_array_ephys/probe ) )
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Tables related to the Neuropixels probe and electrode configuration.
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- | Table | Description |
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- | ------------------------- | -------------------------------------------------------------------------------------------------------------- --- |
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- | ProbeType | A lookup table specifying the type of Neuropixels probe (e.g. "neuropixels 1.0", "neuropixels 2.0 single-shank"). |
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- | ProbeType.Electrode | A table containing electrodes and their properties for a particular probe type. |
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- | Probe | A record of an actual physical probe. |
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- | ElectrodeConfig | A record of a particular electrode configuration to be used for ephys recording. |
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- | ElectrodeConfig.Electrode | A record of electrodes out of those in ` ProbeType.Electrode ` that are used for recording. |
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+ | Table | Description |
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+ | --- | --- |
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+ | ProbeType | A lookup table specifying the type of Neuropixels probe (e.g. "neuropixels 1.0", "neuropixels 2.0 single-shank"). |
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+ | ProbeType.Electrode | A table containing electrodes and their properties for a particular probe type. |
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+ | Probe | A record of an actual physical probe. |
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+ | ElectrodeConfig | A record of a particular electrode configuration to be used for ephys recording. |
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+ | ElectrodeConfig.Electrode | A record of electrodes out of those in ` ProbeType.Electrode ` that are used for recording. |
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### ` ephys ` schema ([ API docs] ( ../api/element_array_ephys/ephys ) )
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Tables related to information about physiological recordings and automatic ingestion of spike sorting results.
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- | Table | Description |
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- | -------------------- | --------------------------------------------------------------------------------------- --- |
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- | ProbeInsertion | A record of surgical insertions of a probe in the brain. |
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- | EphysRecording | A table with metadata about each electrophysiogical recording. |
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- | Clustering | A table with clustering data for spike sorting extracellular electrophysiology data. |
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- | Curation | A table to declare optional manual curation of spike sorting results. |
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- | CuratedClustering | A table with metadata for sorted data generated after each curation. |
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+ | Table | Description |
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+ | --- | --- |
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+ | ProbeInsertion | A record of surgical insertions of a probe in the brain. |
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+ | EphysRecording | A table with metadata about each electrophysiogical recording. |
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+ | Clustering | A table with clustering data for spike sorting extracellular electrophysiology data. |
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+ | Curation | A table to declare optional manual curation of spike sorting results. |
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+ | CuratedClustering | A table with metadata for sorted data generated after each curation. |
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| CuratedClusting.Unit | A part table containing single unit information after spike sorting and optional curation. |
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- | WaveformSet | A table containing spike waveforms for single units. |
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+ | WaveformSet | A table containing spike waveforms for single units. |
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### ` ephys_report ` schema ([ API docs] ( ../api/element_array_ephys/ephys_report ) )
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Tables for storing probe or unit-level visualization results.
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- | Table | Description |
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- | ---------------- | ---------------------------------------------------------- --- |
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+ | Table | Description |
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+ | --- | --- |
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| ProbeLevelReport | A table to store drift map figures generated from each recording probe. |
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- | UnitLevelReport | A table to store figures (waveforms, autocorrelogram, peak waveform + neighbors) generated for each unit. |
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+ | UnitLevelReport | A table to store figures (waveforms, autocorrelogram, peak waveform + neighbors) generated for each unit. |
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## Element Development
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