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Thinh Nguyen
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set up release processes for GH Action
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‎.github/workflows/development.yaml

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name: Development
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on:
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pull_request:
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push:
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tags:
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- '*.*.*'
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jobs:
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publish-release:
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if: github.event_name == 'push'
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needs: test
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runs-on: ubuntu-latest
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env:
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TWINE_USERNAME: ${{secrets.twine_username}}
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TWINE_PASSWORD: ${{secrets.twine_password}}
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outputs:
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release_upload_url: ${{steps.create_gh_release.outputs.upload_url}}
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steps:
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- uses: actions/checkout@v2
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- name: Determine package version
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run: |
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PKG_NAME=$(cat setup.py | awk -F\' '/pkg_name = / {print $2}')
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PKG_VERSION=$(cat ${PKG_NAME}/version.py | awk -F\' '/__version__ = / {print $2}')
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echo "PKG_NAME=${PKG_NAME}" >> $GITHUB_ENV
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echo "PKG_VERSION=${PKG_VERSION}" >> $GITHUB_ENV
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- name: Get changelog entry
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id: changelog_reader
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uses: guzman-raphael/changelog-reader-action@v5
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with:
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path: ./CHANGELOG.md
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version: ${{env.PKG_VERSION}}
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- name: Create GH release
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id: create_gh_release
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uses: actions/create-release@v1
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env:
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GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
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with:
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tag_name: ${{steps.changelog_reader.outputs.version}}
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release_name: Release ${{steps.changelog_reader.outputs.version}}
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body: ${{steps.changelog_reader.outputs.changes}}
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prerelease: ${{steps.changelog_reader.outputs.status == 'prereleased'}}
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draft: ${{steps.changelog_reader.outputs.status == 'unreleased'}}
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- name: Fetch image artifact
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uses: actions/download-artifact@v2
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with:
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name: image-${{env.PKG_NAME}}-${{env.PKG_VERSION}}-py3.8-alpine
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- name: Fetch pip artifacts
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uses: actions/download-artifact@v2
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with:
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name: pip-${{env.PKG_NAME}}-${{env.PKG_VERSION}}
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path: dist
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- name: Publish pip release
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run: |
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export HOST_UID=$(id -u)
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docker load < "image-${{env.PKG_NAME}}-${PKG_VERSION}-py3.8-alpine.tar.gz"
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docker-compose -f docker-compose-build.yaml run \
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-e TWINE_USERNAME=${TWINE_USERNAME} -e TWINE_PASSWORD=${TWINE_PASSWORD} ${PKG_NAME} \
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sh -lc "pip install twine && python -m twine upload dist/*"
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- name: Determine pip artifact paths
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run: |
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echo "PKG_WHEEL_PATH=$(ls dist/${PKG_NAME}-*.whl)" >> $GITHUB_ENV
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echo "PKG_SDIST_PATH=$(ls dist/${PKG_NAME}-*.tar.gz)" >> $GITHUB_ENV
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- name: Upload pip wheel asset to release
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uses: actions/upload-release-asset@v1
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env:
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GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
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with:
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upload_url: ${{steps.create_gh_release.outputs.upload_url}}
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asset_path: ${{env.PKG_WHEEL_PATH}}
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asset_name: pip-${{env.PKG_NAME}}-${{env.PKG_VERSION}}.whl
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asset_content_type: application/zip
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- name: Upload pip sdist asset to release
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uses: actions/upload-release-asset@v1
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env:
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GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
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with:
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upload_url: ${{steps.create_gh_release.outputs.upload_url}}
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asset_path: ${{env.PKG_SDIST_PATH}}
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asset_name: pip-${{env.PKG_NAME}}-${{env.PKG_VERSION}}.tar.gz
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asset_content_type: application/gzip

‎CHANGELOG.md

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Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention.
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## [0.1.0a2] - 2021-04-16
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### Added
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### Added
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+ `probe` and `ephys` elements
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+ Readers for: `SpikeGLX`, `Open Ephys`, `Kilosort`
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+ Probe table supporting: Neuropixels probes 1.0 - 3A, 1.0 - 3B, 2.0 - SS, 2.0 - MS
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[0.1.0a2]: https://github.com/datajoint/element-array-ephys/releases/tag/0.1.0a2

‎Dockerfile

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ARG PY_VER
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ARG DISTRO
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ARG IMAGE
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ARG PKG_NAME
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ARG PKG_VERSION
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FROM datajoint/${IMAGE}:py${PY_VER}-${DISTRO}
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COPY --chown=dja:anaconda ./requirements.txt ./setup.py \
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/main/
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COPY --chown=dja:anaconda ./${PKG_NAME} /main/${PKG_NAME}
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RUN \
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cd /main && \
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pip install . && \
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rm -R /main/*
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WORKDIR /main

‎docker-compose-build.yaml

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# PY_VER=3.8 IMAGE=djbase DISTRO=alpine PKG_NAME=$(cat setup.py | awk -F\' '/pkg_name = / {print $2}') PKG_VERSION=$(cat ${PKG_NAME}/version.py | awk -F\' '/__version__/ {print $2}') HOST_UID=$(id -u) docker-compose -f docker-compose-build.yaml up --build
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#
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# Intended for updating dependencies and docker image.
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# Used to build release artifacts.
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version: "2.4"
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services:
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element:
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build:
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context: .
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args:
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- PY_VER
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- DISTRO
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- IMAGE
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- PKG_NAME
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- PKG_VERSION
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image: datajoint/${PKG_NAME}:${PKG_VERSION}
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user: ${HOST_UID}:anaconda
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volumes:
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- .:/main
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command:
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- sh
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- -lc
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- |
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set -e
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rm -R build dist *.egg-info || echo "No prev build"
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python setup.py bdist_wheel sdist

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