Merge pull request #179 from JaerongA/datajoint-spikeinterface

SpikeInterface integration (WIP)

Author: Thinh Nguyen

.github/workflows/test.yaml

@@ -1,7 +1,11 @@
 name: Test
 on:
   push:
+    branches:
+      - main
   pull_request:
+    branches:
+      - main
   workflow_dispatch:
 jobs:
   devcontainer-build:
@@ -31,4 +35,3 @@ jobs:
         run: |
           python_version=${{matrix.py_ver}}
           black element_array_ephys --check --verbose --target-version py${python_version//.}
-

.pre-commit-config.yaml

@@ -3,7 +3,7 @@ exclude: (^.github/|^docs/|^images/)
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v4.5.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
@@ -16,7 +16,7 @@ repos:
 
   # black
   - repo: https://github.com/psf/black
-    rev: 22.12.0
+    rev: 24.2.0
     hooks:
       - id: black
       - id: black-jupyter
@@ -25,15 +25,15 @@ repos:
 
   # isort
   - repo: https://github.com/pycqa/isort
-    rev: 5.11.2
+    rev: 5.13.2
     hooks:
       - id: isort
         args: ["--profile", "black"]
         description: Sorts imports in an alphabetical order
 
   # flake8
   - repo: https://github.com/pycqa/flake8
-    rev: 4.0.1
+    rev: 7.0.0
     hooks:
       - id: flake8
         args: # arguments to configure flake8

element_array_ephys/__init__.py

@@ -1 +1,22 @@
+"""
+isort:skip_file
+"""
+
+import logging
+import os
+
+import datajoint as dj
+
+
+__all__ = ["ephys", "get_logger"]
+
+dj.config["enable_python_native_blobs"] = True
+
+
+def get_logger(name):
+    log = logging.getLogger(name)
+    log.setLevel(os.getenv("LOGLEVEL", "INFO"))
+    return log
+
+
 from . import ephys_acute as ephys