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docs/mkdocs.yaml

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--- # ---------------------- PROJECT SPECIFIC ---------------------------
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# ---------------------- PROJECT SPECIFIC ---------------------------
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site_name: DataJoint Documentation
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site_url: http://localhost/docs/elements/element-array-ephys

docs/src/concepts.md

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@@ -62,37 +62,37 @@ Each of the DataJoint Elements creates a set of tables for common neuroscience d
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| Table | Description |
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| --- | --- |
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| Subject | Basic information of the research subject. |
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| Subject | A table containing basic information of the research subject. |
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### `session` schema ([API docs](https://datajoint.com/docs/elements/element-session/api/element_session/session_with_datetime))
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| Table | Description |
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| --- | --- |
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| Session | Unique experimental session identifier. |
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| Session | A table for unique experimental session identifiers. |
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### `probe` schema ([API docs](../api/element_array_ephys/probe))
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Tables related to the Neuropixels probe and electrode configuration.
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| Table | Description |
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| --- | --- |
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| ProbeType | a lookup table specifying the type of Neuropixels probe (e.g. "neuropixels 1.0", "neuropixels 2.0 single-shank"). |
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| ProbeType.Electrode | a table containing electrodes and their properties for a particular probe type. |
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| Probe | a record of an actual physical probe. |
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| ElectrodeConfig | a record of a particular electrode configuration to be used for ephys recording. |
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| ElectrodeConfig.Electrode | a record of electrodes out of those in `ProbeType.Electrode` that are used for recording. |
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| ProbeType | A lookup table specifying the type of Neuropixels probe (e.g. "neuropixels 1.0", "neuropixels 2.0 single-shank"). |
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| ProbeType.Electrode | A table containing electrodes and their properties for a particular probe type. |
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| Probe | A record of an actual physical probe. |
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| ElectrodeConfig | A record of a particular electrode configuration to be used for ephys recording. |
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| ElectrodeConfig.Electrode | A record of electrodes out of those in `ProbeType.Electrode` that are used for recording. |
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### `ephys` schema ([API docs](../api/element_array_ephys/ephys))
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Tables related to information about physiological recordings and automatic ingestion of spike sorting results.
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| Table | Description |
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| --- | --- |
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| ProbeInsertion | a record of surgical insertions of a probe in the brain. |
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| EphysRecording | a table with metadata about each electrophysiogical recording. |
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| Clustering | a table with clustering data for spike sorting extracellular electrophysiology data. |
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| Curation | a table to declare optional manual curation of spike sorting results. |
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| CuratedClustering | a table with metadata for sorted data generated after each curation. |
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| CuratedClusting.Unit | a part table containing single unit information after spike sorting and optional curation. |
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| WaveformSet | a table containing spike waveforms for single units. |
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| ProbeInsertion | A record of surgical insertions of a probe in the brain. |
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| EphysRecording | A table with metadata about each electrophysiogical recording. |
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| Clustering | A table with clustering data for spike sorting extracellular electrophysiology data. |
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| Curation | A table to declare optional manual curation of spike sorting results. |
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| CuratedClustering | A table with metadata for sorted data generated after each curation. |
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| CuratedClusting.Unit | A part table containing single unit information after spike sorting and optional curation. |
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| WaveformSet | A table containing spike waveforms for single units. |
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## Element Development
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