Merge pull request #91 from ttngu207/no-curation

Thinh Nguyen · web-flow · commit 6757ef738b95 · 2022-09-14T16:11:41.000-05:00
bugfix for catgt
diff --git a/element_array_ephys/readers/kilosort_triggering.py b/element_array_ephys/readers/kilosort_triggering.py
@@ -139,6 +139,7 @@ def generate_CatGT_input_json(self):
                         input_meta_path=input_meta_fullpath.as_posix(),
                         extracted_data_directory=self._ks_output_dir.as_posix(),
                         kilosort_output_directory=self._ks_output_dir.as_posix(),
+                        kilosort_output_tmp=self._ks_output_dir.as_posix(),
                         kilosort_repository=_get_kilosort_repository(self._KS2ver),
                         **{k: v for k, v in catgt_params.items() if k in self._input_json_args}
                         )

Original file line number	Diff line number	Diff line change
`@@ -139,6 +139,7 @@ def generate_CatGT_input_json(self):`
`139`	`139`	`input_meta_path=input_meta_fullpath.as_posix(),`
`140`	`140`	`extracted_data_directory=self._ks_output_dir.as_posix(),`
`141`	`141`	`kilosort_output_directory=self._ks_output_dir.as_posix(),`
	`142`	`+ kilosort_output_tmp=self._ks_output_dir.as_posix(),`
`142`	`143`	`kilosort_repository=_get_kilosort_repository(self._KS2ver),`
`143`	`144`	`**{k: v for k, v in catgt_params.items() if k in self._input_json_args}`
`144`	`145`	`)`