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lines changed Original file line number Diff line number Diff line change @@ -16,7 +16,26 @@ ephys pipeline.
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## Element architecture
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- ![ element-array-ephys diagram] ( images/attached_array_ephys_element.svg )
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+ ` element-array-ephys ` is comprised of two schemas, ` probe ` and ` ephys ` . To handle
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+ several use cases of this pipeline, we have designed several ` ephys ` schemas, including
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+ ` ephys_acute ` , ` ephys_chronic ` , and ` ephys_precluster ` .
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+
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+ + ` ephys_acute ` - A probe(s) is inserted into a new location during each session.
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+ + ` ephys_chronic ` - A probe(s) is inserted once and used to record across multiple
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+ sessions.
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+ + ` ephys_precluster ` - A probe(s) is inserted into a new location during each session.
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+ And pre-clustering steps (e.g. CatGT) are performed on the data from each probe prior
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+ to Kilosort analysis.
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+ ### ` ephys_acute ` module
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+ ![ element-array-ephys acute diagram] ( images/attached_array_ephys_element_acute.svg )
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+ ### ` ephys_precluster ` module
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+ ![ element-array-ephys precluster diagram] (
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+ images/attached_array_ephys_element_precluster.svg)
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As the diagram depicts, the array ephys element starts immediately downstream from ` Session ` ,
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and also requires some notion of ` Location ` as a dependency for ` InsertionLocation ` . We
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