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Merge pull request #468 from datacarpentry/update/packages
Update 14 packages
2 parents 7ba1a39 + 3f034bd commit ee44882

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‎renv/activate.R

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@
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local({
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44
# the requested version of renv
5-
version <- "1.1.0"
5+
version <- "1.1.2"
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attr(version, "sha") <- NULL
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# the project directory
@@ -135,12 +135,12 @@ local({
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# R help links
137137
pattern <- "`\\?(renv::(?:[^`])+)`"
138-
replacement <- "`\033]8;;ide:help:\\1\a?\\1\033]8;;\a`"
138+
replacement <- "`\033]8;;x-r-help:\\1\a?\\1\033]8;;\a`"
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text <- gsub(pattern, replacement, text, perl = TRUE)
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# runnable code
142142
pattern <- "`(renv::(?:[^`])+)`"
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replacement <- "`\033]8;;ide:run:\\1\a\\1\033]8;;\a`"
143+
replacement <- "`\033]8;;x-r-run:\\1\a\\1\033]8;;\a`"
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text <- gsub(pattern, replacement, text, perl = TRUE)
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# return ansified text

‎renv/profiles/lesson-requirements/renv.lock

Lines changed: 47 additions & 42 deletions
Original file line numberDiff line numberDiff line change
@@ -93,11 +93,11 @@
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},
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"MASS": {
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"Package": "MASS",
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"Version": "7.3-64",
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"Version": "7.3-65",
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"Source": "Repository",
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"Priority": "recommended",
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"Date": "2025-01-06",
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"Revision": "$Rev: 3680 $",
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"Date": "2025-02-19",
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"Revision": "$Rev: 3681 $",
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"Depends": [
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"R (>= 4.4.0)",
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"grDevices",
@@ -174,27 +174,29 @@
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},
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"R6": {
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"Package": "R6",
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"Version": "2.5.1",
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"Version": "2.6.1",
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"Source": "Repository",
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"Title": "Encapsulated Classes with Reference Semantics",
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"Authors@R": "person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@stdout.org\")",
180+
"Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
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"Description": "Creates classes with reference semantics, similar to R's built-in reference classes. Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. These classes allow public and private members, and they support inheritance, even when the classes are defined in different packages.",
182+
"License": "MIT + file LICENSE",
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"URL": "https://r6.r-lib.org, https://github.com/r-lib/R6",
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"BugReports": "https://github.com/r-lib/R6/issues",
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"Depends": [
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"R (>= 3.0)"
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"R (>= 3.6)"
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],
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"Suggests": [
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"testthat",
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"pryr"
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"lobstr",
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"testthat (>= 3.0.0)"
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],
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"License": "MIT + file LICENSE",
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"URL": "https://r6.r-lib.org, https://github.com/r-lib/R6/",
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"BugReports": "https://github.com/r-lib/R6/issues",
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"RoxygenNote": "7.1.1",
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"Config/Needs/website": "tidyverse/tidytemplate, ggplot2, microbenchmark, scales",
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"Config/testthat/edition": "3",
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"Encoding": "UTF-8",
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"RoxygenNote": "7.3.2",
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"NeedsCompilation": "no",
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"Author": "Winston Chang [aut, cre]",
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"Maintainer": "Winston Chang <winston@stdout.org>",
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"Repository": "RSPM",
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"Encoding": "UTF-8"
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"Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd]",
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"Maintainer": "Winston Chang <winston@posit.co>",
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"Repository": "CRAN"
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},
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"RColorBrewer": {
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"Package": "RColorBrewer",
@@ -412,10 +414,10 @@
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},
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"cli": {
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"Package": "cli",
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"Version": "3.6.3",
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"Version": "3.6.4",
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"Source": "Repository",
417419
"Title": "Helpers for Developing Command Line Interfaces",
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"Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
420+
"Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"gabor@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
419421
"Description": "A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.",
420422
"License": "MIT + file LICENSE",
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"URL": "https://cli.r-lib.org, https://github.com/r-lib/cli",
@@ -437,26 +439,25 @@
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"htmlwidgets",
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"knitr",
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"methods",
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"mockery",
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"processx",
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"ps (>= 1.3.4.9000)",
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"rlang (>= 1.0.2.9003)",
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"rmarkdown",
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"rprojroot",
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"rstudioapi",
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"testthat",
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"testthat (>= 3.2.0)",
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"tibble",
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"whoami",
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"withr"
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],
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"Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc, fansi, prettyunits, sessioninfo, tidyverse/tidytemplate, usethis, vctrs",
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"Config/testthat/edition": "3",
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"Encoding": "UTF-8",
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"RoxygenNote": "7.2.3",
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"RoxygenNote": "7.3.2",
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"NeedsCompilation": "yes",
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"Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Posit Software, PBC [cph, fnd]",
458-
"Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
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"Repository": "RSPM"
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"Maintainer": "Gábor Csárdi <gabor@posit.co>",
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"Repository": "CRAN"
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},
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"colorspace": {
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"Package": "colorspace",
@@ -1187,7 +1188,7 @@
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},
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"jsonlite": {
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"Package": "jsonlite",
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"Version": "1.8.9",
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"Version": "1.9.1",
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"Source": "Repository",
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"Title": "A Simple and Robust JSON Parser and Generator for R",
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"License": "MIT + file LICENSE",
@@ -1213,7 +1214,7 @@
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"Encoding": "UTF-8",
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"NeedsCompilation": "yes",
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"Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)",
1216-
"Repository": "RSPM"
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"Repository": "CRAN"
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},
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"knitr": {
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"Package": "knitr",
@@ -1699,16 +1700,16 @@
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},
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"purrr": {
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"Package": "purrr",
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"Version": "1.0.2",
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"Version": "1.0.4",
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"Source": "Repository",
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"Title": "Functional Programming Tools",
1705-
"Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Lionel\", \"Henry\", , \"lionel@rstudio.com\", role = \"aut\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
1706+
"Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
17061707
"Description": "A complete and consistent functional programming toolkit for R.",
17071708
"License": "MIT + file LICENSE",
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"URL": "https://purrr.tidyverse.org/, https://github.com/tidyverse/purrr",
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"BugReports": "https://github.com/tidyverse/purrr/issues",
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"Depends": [
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"R (>= 3.5.0)"
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"R (>= 4.0)"
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],
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"Imports": [
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"cli (>= 3.6.1)",
@@ -1733,14 +1734,16 @@
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],
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"VignetteBuilder": "knitr",
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"Biarch": "true",
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"Config/build/compilation-database": "true",
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"Config/Needs/website": "tidyverse/tidytemplate, tidyr",
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"Config/testthat/edition": "3",
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"Config/testthat/parallel": "TRUE",
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"Encoding": "UTF-8",
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"RoxygenNote": "7.2.3",
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"RoxygenNote": "7.3.2",
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"NeedsCompilation": "yes",
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"Author": "Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>), Lionel Henry [aut], RStudio [cph, fnd]",
1742-
"Maintainer": "Hadley Wickham <hadley@rstudio.com>",
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"Repository": "RSPM"
1744+
"Author": "Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>), Lionel Henry [aut], Posit Software, PBC [cph, fnd] (03wc8by49)",
1745+
"Maintainer": "Hadley Wickham <hadley@posit.co>",
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"Repository": "CRAN"
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},
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"rappdirs": {
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"Package": "rappdirs",
@@ -1811,11 +1814,12 @@
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"NeedsCompilation": "yes",
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"Author": "Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>), Jacob van Etten [ctb], Michael Sumner [ctb], Joe Cheng [ctb], Dan Baston [ctb], Andrew Bevan [ctb], Roger Bivand [ctb], Lorenzo Busetto [ctb], Mort Canty [ctb], Ben Fasoli [ctb], David Forrest [ctb], Aniruddha Ghosh [ctb], Duncan Golicher [ctb], Josh Gray [ctb], Jonathan A. Greenberg [ctb], Paul Hiemstra [ctb], Kassel Hingee [ctb], Alex Ilich [ctb], Institute for Mathematics Applied Geosciences [cph], Charles Karney [ctb], Matteo Mattiuzzi [ctb], Steven Mosher [ctb], Babak Naimi [ctb], Jakub Nowosad [ctb], Edzer Pebesma [ctb], Oscar Perpinan Lamigueiro [ctb], Etienne B. Racine [ctb], Barry Rowlingson [ctb], Ashton Shortridge [ctb], Bill Venables [ctb], Rafael Wueest [ctb]",
18131816
"Maintainer": "Robert J. Hijmans <r.hijmans@gmail.com>",
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"Repository": "CRAN"
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"Repository": "RSPM",
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"Encoding": "UTF-8"
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},
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"renv": {
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"Package": "renv",
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"Version": "1.1.0",
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"Version": "1.1.2",
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"Source": "Repository",
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"Type": "Package",
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"Title": "Project Environments",
@@ -2227,7 +2231,8 @@
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"NeedsCompilation": "yes",
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"Author": "Edzer Pebesma [aut, cre], Roger Bivand [aut], Barry Rowlingson [ctb], Virgilio Gomez-Rubio [ctb], Robert Hijmans [ctb], Michael Sumner [ctb], Don MacQueen [ctb], Jim Lemon [ctb], Finn Lindgren [ctb], Josh O'Brien [ctb], Joseph O'Rourke [ctb], Patrick Hausmann [ctb]",
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"Maintainer": "Edzer Pebesma <edzer.pebesma@uni-muenster.de>",
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"Repository": "CRAN"
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"Repository": "RSPM",
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"Encoding": "UTF-8"
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},
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"stringi": {
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"Package": "stringi",
@@ -2304,11 +2309,11 @@
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},
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"terra": {
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"Package": "terra",
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"Version": "1.8-15",
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"Version": "1.8-29",
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"Source": "Repository",
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"Type": "Package",
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"Title": "Spatial Data Analysis",
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"Date": "2025-01-23",
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"Date": "2025-02-25",
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"Depends": [
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"R (>= 3.5.0)"
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],
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},
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"tinytex": {
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"Package": "tinytex",
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"Version": "0.54",
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"Version": "0.56",
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"Source": "Repository",
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"Type": "Package",
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"Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents",
@@ -2528,7 +2533,7 @@
25282533
"NeedsCompilation": "no",
25292534
"Author": "Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>), Devon Ryan [ctb] (<https://orcid.org/0000-0002-8549-0971>), Ethan Heinzen [ctb], Fernando Cagua [ctb]",
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"Maintainer": "Yihui Xie <xie@yihui.name>",
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"Repository": "RSPM"
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"Repository": "CRAN"
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},
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"units": {
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"Package": "units",
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27482753
},
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"xfun": {
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"Package": "xfun",
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"Version": "0.50",
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"Version": "0.51",
27522757
"Source": "Repository",
27532758
"Type": "Package",
27542759
"Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'",
2755-
"Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Daijiang\", \"Li\", role = \"ctb\"), person(\"Xianying\", \"Tan\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person() )",
2760+
"Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Daijiang\", \"Li\", role = \"ctb\"), person(\"Xianying\", \"Tan\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person() )",
27562761
"Description": "Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.",
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"Depends": [
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"R (>= 3.2.0)"
@@ -2792,7 +2797,7 @@
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"RoxygenNote": "7.3.2",
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"VignetteBuilder": "litedown",
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"NeedsCompilation": "yes",
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"Author": "Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Christophe Dervieux [ctb]",
2800+
"Author": "Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Christophe Dervieux [ctb]",
27962801
"Maintainer": "Yihui Xie <xie@yihui.name>",
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"Repository": "CRAN"
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},

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