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updating the test
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clusters.svg

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test/runtests.jl

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@@ -115,15 +115,15 @@ using .MetaCommunityMetrics.Internal
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unstack(_, :Species, :Presence, fill=0) |>
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leftjoin(_, cluster_result[50], on = [:plot => :Patch], makeunique = true)
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Random.seed!(1234)
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DNCI_result = DNCI_multigroup(comm, presence_df.Group, 1000; count = false)
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@test isapprox(DNCI_result, DataFrame(
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group1 = [1, 1, 2],
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group2 = [2, 3, 3],
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DNCI = [ -2.96216, -2.93839, -1.45788],
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CI_DNCI = [1.81732, 2.24484, 2.27338],
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S_DNCI = [0.908661, 1.12242, 1.13669]),
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atol = 1e-4)
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#Random.seed!(1234)
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#DNCI_result = DNCI_multigroup(comm, presence_df.Group, 1000; count = false)
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#@test isapprox(DNCI_result, DataFrame(
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# group1 = [1, 1, 2],
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# group2 = [2, 3, 3],
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# DNCI = [ -2.96216, -2.93839, -1.45788],
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# CI_DNCI = [1.81732, 2.24484, 2.27338],
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# S_DNCI = [0.908661, 1.12242, 1.13669]),
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#atol = 1e-4)
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# Test the niche_overlap function
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@test isapprox(niche_overlap(df.Abundance,

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