Update build_docs.yaml

Author: lufre1

.github/workflows/build_docs.yaml

@@ -25,19 +25,16 @@ jobs:
     - name: Set up Micromamba
       uses: mamba-org/setup-micromamba@v2
       with:
-        micromamba-version: "latest"       # Use the latest version of micromamba
+        micromamba-version: "latest"
         environment-file: .github/doc_env.yaml  # Reference your environment.yml file
         init-shell: bash
         cache-environment: true
         post-cleanup: 'all'
-        # cache: true                        # Cache the micromamba environment
 
     - name: Install package
-      # shell: bash -l {0}
       run: pip install -e .
 
     - name: Generate Documentation
-      shell: bash -l {0} 
       run: pdoc synaptic_reconstruction -o doc/html
 
     - name: Verify Documentation Output
@@ -46,7 +43,7 @@ jobs:
     - name: Upload Documentation Artifact
       uses: actions/upload-artifact@v3
       with:
-        name: documentation
+        name: github-pages  # Must match the artifact_name in deploy-pages
         path: doc/html
 
   deploy:
@@ -56,21 +53,64 @@ jobs:
     permissions:
       pages: write
       id-token: write
-    environment:
-      name: github-pages
-      url: ${{ steps.deployment.outputs.page_url }}
     steps:
-      - name: Download Documentation Artifact
-        uses: actions/download-artifact@v3
-        with:
-          name: documentation
-      - name: Deploy to GiHub Pages
-        uses: actions/deploy-pages@v2  
-        with: 
-          artifact_name: github-pages
-  # deploy:
-  #   - name: Deploy to GitHub Pages
-  #     uses: peaceiris/actions-gh-pages@v3
-  #     with:
-  #       github_token: ${{ secrets.GITHUB_TOKEN }}
-  #       publish_dir: doc/html
+    - name: Deploy to GitHub Pages
+      uses: actions/deploy-pages@v2
+      with:
+        artifact_name: github-pages
+# jobs:
+#   build:
+#     name: Build Documentation
+#     runs-on: ubuntu-latest
+
+#     steps:
+#     - name: Checkout Code
+#       uses: actions/checkout@v3
+
+#     - name: Set up Micromamba
+#       uses: mamba-org/setup-micromamba@v2
+#       with:
+#         micromamba-version: "latest"       # Use the latest version of micromamba
+#         environment-file: .github/doc_env.yaml  # Reference your environment.yml file
+#         init-shell: bash
+#         cache-environment: true
+#         post-cleanup: 'all'
+#         # cache: true                        # Cache the micromamba environment
+
+#     - name: Install package
+#       # shell: bash -l {0}
+#       run: pip install -e .
+
+#     - name: Generate Documentation
+#       shell: bash -l {0} 
+#       run: pdoc synaptic_reconstruction -o doc/html
+
+#     - name: Verify Documentation Output
+#       run: ls -la doc/html
+
+#     - name: Upload Documentation Artifact
+#       uses: actions/upload-artifact@v3
+#       with:
+#         name: documentation
+#         path: doc/html
+
+#   deploy:
+#     name: Deploy Documentation
+#     needs: build
+#     runs-on: ubuntu-latest
+#     permissions:
+#       pages: write
+#       id-token: write
+#     environment:
+#       name: github-pages
+#       url: ${{ steps.deployment.outputs.page_url }}
+#     steps:
+#       - name: Download Documentation Artifact
+#         uses: actions/download-artifact@v3
+#         with:
+#           name: documentation
+#       - name: Deploy to GiHub Pages
+#         uses: actions/deploy-pages@v2  
+#         with: 
+#           artifact_name: github-pages
+