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Hi!
I am facing the following issue when installing the package:
checking for file ‘/private/var/folders/vm/qk1h59ps603d8j504lr2xn_m0000gn/T/Rtmpfr1klV/remotes1bc441e5ed4b/cole-trapnell-lab-L1-graph-c2a3f26/DESCRIPTION’ ...✔ checking for file ‘/private/var/folders/vm/qk1h59ps603d8j504lr2xn_m0000gn/T/Rtmpfr1klV/remotes1bc441e5ed4b/cole-trapnell-lab-L1-graph-c2a3f26/DESCRIPTION’
─ preparing ‘L1Graph’:
✔ checking DESCRIPTION meta-information ...
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘L1Graph_0.1.1.tar.gz’
Installing package into ‘/usr/local/lib/R/3.6/site-library’
(as ‘lib’ is unspecified)
* installing *source* package ‘L1Graph’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
sh: line 1: 7203 Segmentation fault: 11 R_TESTS= '/usr/local/Cellar/r/3.6.1/lib/R/bin/R' --no-save --slave 2>&1 < '/var/folders/vm/qk1h59ps603d8j504lr2xn_m0000gn/T//Rtmp5Wz09A/file1c1c48edcdad'
*** caught segfault ***
address 0x51148, cause 'memory not mapped'
Traceback:
1: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
3: loadNamespace(package, lib.loc)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)})
8: library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc, quietly = quietly)
9: .getRequiredPackages2(pkgInfo, quietly, lib.loc, useImports)
10: .getRequiredPackages(quietly = TRUE)
11: withCallingHandlers(expr, packageStartupMessage = function(c) invokeRestart("muffleMessage"))
12: suppressPackageStartupMessages(.getRequiredPackages(quietly = TRUE))
An irrecoverable exception occurred. R is aborting now ...
ERROR: lazy loading failed for package ‘L1Graph’
* removing ‘/usr/local/lib/R/3.6/site-library/L1Graph’
Error: Failed to install 'L1Graph' from GitHub:
(converted from warning) installation of package ‘/var/folders/vm/qk1h59ps603d8j504lr2xn_m0000gn/T//Rtmpfr1klV/file1bc45e3df8b9/L1Graph_0.1.1.tar.gz’ had non-zero exit status```
I never faced such error and couldn't find any solution so far. I would appreciate any help with this!
Thanks in advance,
Irina
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