Batching alignments

[sinking-point]

Thanks for this project, it's really useful.

It would be even more useful if you could do alignments in batches. This could make doing lots of alignments on a GPU much faster.

[masoudjs]

Hi,

Thank you for the comment. :)
I have the code for batch alignment and it's been a while that I want to push it.
Sorry for the delay. I will test it and push it soon.

[sinking-point]

Fantastic, thanks!

[sinking-point]

@masoudjs In the meantime, would you mind pushing the WIP code you have to a feature branch? It would be really useful for me.