Skip to content

New variant calling tools need WDL tasks #119

@mark-welsh

Description

@mark-welsh

Will be adding:

  • Strelka2, an Illumina tool for somatic SNV/Indel calls; tumor normal compatible
  • Manta, another Illumina tool for SV calls
  • Control-FREEC, for CNVs (this is has an interesting runtime setup)
  • MuTect2 (GATK4)
  • LoFreq

Metadata

Metadata

Assignees

Labels

No labels
No labels

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions