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It was not clear why we were getting random issues and then it became clear patch-filters prevented a Checkstyle run in some cases, which is its purpose.
It would be helpful if patch-filters reported something minor like "No files identified as changed" or "Identified X files as changed" so it is clear when allows Checkstyle to run and not run.
I don't think it would have helped this case, but it will make what it is doing clearer.