Issue with the number of new errors for some commits

[maymahmoud84]

Some errors are not counted correctly for the following commits in baseline_cot gpt4-mini

[
"9218cc9c8e0018d01e2d7cfe0e77aae7b65b378f",
"41ec14e7e0ccf28476905eb28b2155b11d8a55f5",
"686ea4e18114ac180e35ca1c07e1f2e6dfbffbe0",
"c32185c43be158d32c7d13c5b816991954eb45fa",
"ae16b526695fe275ab5e6a1992916875d26da860",
"250cafc7d6ae47d5d4803b5a5e58186eb81fa3b5",
"500d9c021d34b307b1a70d3f29fb7f9b5ab9d1a6",
"1a2fb9f65e12d6c43a8472b9b035299b29a75ce8",
"9461431622cf39efe60cf1eb03a94083780c5720",
"9717e34bcda74bd9ad94f6a52ddfd3fd179ea15b",
"3572a1ecc0154c61e05505aed56055b9c5e539a6",
"7f7de81d28b68b091bef2e6f6ffd1836167be6ea"
]

[maymahmoud84]

Fixed, will create script to update the output files without needing to rerun the pipeline