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When using the LiM implementation, I run it on larger datasets and everything works, as long as I don't use the option only_global=False. Whenever it is set, I get the following message:
ValueError: Unknown label type: continuous. Maybe you are trying to fit a classifier, which expects discrete classes on a regression target with continuous values.
In case of running it on with only_global=True, everything works. I checked my data and from what I can see, I correctly define the discrete_indicator to contain all discrete features.