Problem with epitopedia in a cluster

[mile-brem]

Hi,

I am in the process of trying to use epitopedia in a cluster at my institution.

To explain the steps I have done so far:

• I pulled a singularity image to create a container of epitopedia onto my cluster
• I downloaded the PDB in mmCIF (unzipped) to my cluster in a directory known as /cephfs/ as well as the EPI_DB in the linked zip file (Just to clarify, I can skip the step of database generation as you have provided the final database regardless?;again unzipped in my cluster)
• I have created a slurm job (attached) using run_epitopedia and my protein of interest 5ELI

Now here is where I run into my problem:

• I get an error message that the database cannot be opened (attached)

At am at a loss as to where the issue might be and I hope someone might be able to shed light. It looks like it's a problem with perhaps the plugin running on a cluster system rather than a local system maybe?

Thanks,
TREM2_log.log

Miles
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