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Description
In both the electrode table and the units table
It has been noted some inconsistencies in anatomical values
Maybe it's a bug in the code, maybe it was an old issue in the source data
Need to figure out
Ecephys:
IBL-to-nwb/ibl_to_nwb/datainterfaces/iblstreaminginterface.py
Lines 79 to 92 in 5195b4e
self.recording_extractor.set_property(key="ibl_x", values=ibl_coords[:, 0]) | |
self.recording_extractor.set_property(key="ibl_y", values=ibl_coords[:, 1]) | |
self.recording_extractor.set_property(key="ibl_z", values=ibl_coords[:, 2]) | |
self.recording_extractor.set_property( # SpikeInterface refers to this as 'brain_area' | |
key="brain_area", values=list(channels["acronym"]) # NeuroConv remaps to 'location', a required field | |
) # Acronyms are symmetric, do not differentiate hemisphere | |
self.recording_extractor.set_property( | |
key="beryl_location", | |
values=list(brain_regions.id2acronym(atlas_id=channels["atlas_id"], mapping="Beryl")), | |
) | |
self.recording_extractor.set_property( | |
key="cosmos_location", | |
values=list(brain_regions.id2acronym(atlas_id=channels["atlas_id"], mapping="Cosmos")), | |
) |
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