v0.8.0

Added

• Ideogram.js (#115)
• Genome tab (under 'Explore' in Study Overview) for genome-based visualizations (#115)
• Support for running WDLs that are file- rather than sample-based. (#115)
• CongifurationOption class for adding key-value extra configuration options to AdminConfigurations (#115)

Changed

• Reorganized front end tabs, 'workflows' is now called 'analysis' (#115)
• Updated custom CellRanger sync to support new version of WDL (#115)

Fixed

• Portal no longer attempts to load billing accounts that a user is not the owner of, which prevents loading the billing_projects section and blocks some study creation (#115)
• Correctly sanitizing cluster & gene list names on creation to prevent invalid URL parameter parsing (#115)
• Correctly catches 409 conflict errors when creating workspaces and prevents deletion (#115)

v0.7.0

Added

• bin/boot_docker now accepts a value for DOCKER_IMAGE_VERSION as a command line argument (#112)

Changed

• Booting the portal in production no longer tries to link with a local Docker instance for the database, instead will connect to a remote host (#112)
• Booting in production mode also will no longer limit memory for the portal Docker container (#112)

Fixed

• Updating rails-html-sanitizer gem re: CVE-2018-3741 XSS vulnerability (#112)
• Updating loofah gem re: CVE-2018-8048 XSS vulnerability (#112)

v0.6.4

Fixed

• Correcting CellRanger transcriptomeTarGz input parameter namespacing in WorkflowConfiguration

v0.6.3

Fixed

• Weekly returning users query in ReportsController now returns the most recent 6 months, not first 6 months of reporting

v0.6.2

Fixed

• Properly handling querying for fastq file size in Reports Controller plot on input file size vs. runtime (#106, #107)

v0.6.1

Fixed

• Corrected url parameter name when enabling/preserving branding mode (#105)

v0.6.0

Added

• WorkflowConfiguration support for Smart-seq2 WDL pipeline (#102)

Changed

• Automatically adding project owner permissions for portal service account on FireCloud projects created outside of the portal when creating studies (#102)
• Docker image now supports version numbers, will default to 'latest' (#102)

Fixed

• Preventing users from changing FireCloud project references to existing studies (#102)

v0.5.0

Added

• Configurable branding groups to apply a custom look & feel to groups of studies, including scoping search and discovery (#99, #100)

Changed

• Clicking 'Sign In' now initiates authentication handshake immediately rather than requiring the user to click the 'Sign in with Google' button (#99)

v0.4.0

Added

• New files types to support 10X Genomics analyses (Matrix Market Coordinate formatted expression matrices, plus gene and barcode list files) (#97)
• Specialized 'sync' functionality for analysis workflow outputs (#97)

Changed

• Consolidating JS functions for study file sync forms into shared template (#97)
• Updating WorkflowConfiguration class to support most recent CellRanger WDL (single-cell-portal/cell-ranger-2-0-2 v3) (#97)

Fixed

• Corrected bug with deleting workspace submissions failing due to deserialization error of 'Google::Cloud::Storage::File::List' objects, job now runs in foreground instead. (#97)

v0.3.3

Changed

• Updating WorkflowConfiguration for release of CellRanger WDL pipeline (#93)

Fixed

• Fixed erroneous associations when parsing metadata files > 100K cells (#94)