Encountering strange pedigree for a family

[anjalijain22]

Hello, hope you're doing well!

I am trying to add a family to a seqr project but encountering strange pedigrees. This is the template individual file that I created: test_individuals.xlsx. The in-built pedigree shows up weirdly with the father and mother having a consanguineous relationship even though I haven't specified this and the dad is part of the previous generation.

The expected pedigree should look something like this ( I created this in powerpoint):

Do you have any suggestions as to why this is happening?

Many thanks for your time!

[hanars]

this is actually a bug in seqr's pedigree drawing, thank you for reporting! You can manually edit the pedigrees shown in seqr by clicking on the pedgree and then hovering over the individuals you want to edit. I would recommend you delete "father" from the pedigree and then add a new spouse to mother and that should fix the issue for you

[hanars]

We will be fixing this bug in seqr itself but that that take a couple weeks

[anjalijain22]

Hi @hanars, that's great - thank you for looking into it!
Another strange behaviour I noticed while manually editing the pedigree is that deleting the father also deleted the proband (whose info is already available in the uploaded template). After manually adding the dad and the proband, when I try to edit the proband info in the pedigree (such as sex, affected status, ID etc) and click "Update", the form just keeps loading indefinitely (screenshot below). Closing the form gives a pop up message along the lines of "The form has unsaved changes, are you sure you want to exit...?" and upon exiting, sometimes the proband info will still get updated in the pedigree and other times it won't. I am not sure if this is specific to just our local instance or if you're experiencing this too. Thought I would report this as well while you're looking into the other bug. Many thanks for all your effort - it is much appreciated!!

[hanars]

the fix for this is available in the latest seqr release