diff --git a/v03_pipeline/lib/annotations/enums.py b/v03_pipeline/lib/annotations/enums.py index 8b469cda9..25a03faa0 100644 --- a/v03_pipeline/lib/annotations/enums.py +++ b/v03_pipeline/lib/annotations/enums.py @@ -4,7 +4,7 @@ 'IG_C_gene', 'IG_D_gene', 'IG_J_gene', - 'IG_LV_gene', + #'IG_LV_gene', 'IG_V_gene', 'TR_C_gene', 'TR_J_gene', @@ -28,14 +28,14 @@ 'sRNA', 'scaRNA', 'lncRNA', - 'Mt_tRNA_pseudogene', - 'tRNA_pseudogene', - 'snoRNA_pseudogene', - 'snRNA_pseudogene', - 'scRNA_pseudogene', + #'Mt_tRNA_pseudogene', + #'tRNA_pseudogene', + #'snoRNA_pseudogene', + #'snRNA_pseudogene', + #'scRNA_pseudogene', 'rRNA_pseudogene', - 'misc_RNA_pseudogene', - 'miRNA_pseudogene', + #'misc_RNA_pseudogene', + #'miRNA_pseudogene', 'TEC', 'nonsense_mediated_decay', 'non_stop_decay', @@ -44,35 +44,35 @@ 'protein_coding_LoF', 'protein_coding_CDS_not_defined', 'processed_transcript', - 'non_coding', - 'ambiguous_orf', + #'non_coding', + #'ambiguous_orf', 'sense_intronic', 'sense_overlapping', - 'antisense/antisense_RNA', + #'antisense/antisense_RNA', 'antisense', - 'known_ncrna', + #'known_ncrna', 'pseudogene', 'processed_pseudogene', 'polymorphic_pseudogene', - 'retrotransposed', + #'retrotransposed', 'transcribed_processed_pseudogene', 'transcribed_unprocessed_pseudogene', 'transcribed_unitary_pseudogene', 'translated_processed_pseudogene', - 'translated_unprocessed_pseudogene', + #'translated_unprocessed_pseudogene', 'unitary_pseudogene', 'unprocessed_pseudogene', - 'artifact', + #'artifact', 'lincRNA', - 'lincrna', - 'macro_lncRNA', - '3prime_overlapping_ncRNA', - 'disrupted_domain', - 'vaultRNA/vault_RNA', - 'vaultRNA', + #'lincrna', + #'macro_lncRNA', + #'3prime_overlapping_ncRNA', + #'disrupted_domain', + #'vaultRNA/vault_RNA', + #'vaultRNA', 'vault_RNA', 'bidirectional_promoter_lncRNA', - '3prime_overlapping_ncrna', + #'3prime_overlapping_ncrna', ] REGULATORY_BIOTYPES = [