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Update reference_dataset.py
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v03_pipeline/lib/reference_datasets/reference_dataset.py

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@@ -151,7 +151,7 @@ def get_ht(
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ht = filter_contigs(ht, reference_genome)
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for dataset_type in self.dataset_types(reference_genome):
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validate_allele_type(ht, dataset_type)
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validate_no_duplicate_variants(ht, reference_genome, DatasetType.SNV_INDEL)
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validate_no_duplicate_variants(ht, reference_genome, dataset_type)
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# NB: we do not filter with "filter" here
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# ReferenceDatasets are DatasetType agnostic and that
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# filter is only used at annotation time.

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