add logging

bpblanken · bpblanken · commit f9a6476881bc · 2024-03-01T16:57:28.000-05:00
diff --git a/v03_pipeline/lib/tasks/reference_data/update_variant_annotations_table_with_updated_reference_dataset.py b/v03_pipeline/lib/tasks/reference_data/update_variant_annotations_table_with_updated_reference_dataset.py
@@ -10,6 +10,8 @@
     BaseVariantAnnotationsTableTask,
 )
 
+logger = get_logger(__name__)
+
 
 class UpdateVariantAnnotationsTableWithUpdatedReferenceDataset(
     BaseVariantAnnotationsTableTask,
@@ -56,6 +58,7 @@ def complete(self) -> bool:
                     self.dataset_type,
                 ),
             )
+        logger.info(f'Datasets to update: {self._datasets_to_update}')
         return not self._datasets_to_update
 
     def update_table(self, ht: hl.Table) -> hl.Table:

Original file line number	Diff line number	Diff line change
`@@ -10,6 +10,8 @@`
`10`	`10`	`BaseVariantAnnotationsTableTask,`
`11`	`11`	`)`
`12`	`12`
	`13`	`+logger = get_logger(__name__)`
	`14`	`+`
`13`	`15`
`14`	`16`	`class UpdateVariantAnnotationsTableWithUpdatedReferenceDataset(`
`15`	`17`	`BaseVariantAnnotationsTableTask,`
`@@ -56,6 +58,7 @@ def complete(self) -> bool:`
`56`	`58`	`self.dataset_type,`
`57`	`59`	`),`
`58`	`60`	`)`
	`61`	`+ logger.info(f'Datasets to update: {self._datasets_to_update}')`
`59`	`62`	`return not self._datasets_to_update`
`60`	`63`
`61`	`64`	`def update_table(self, ht: hl.Table) -> hl.Table:`