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v03_pipeline/lib/tasks/write_imported_callset.py

Lines changed: 6 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -63,7 +63,9 @@ def requires(self) -> list[luigi.Task]:
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*requirements,
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CallsetTask(
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valid_filters_path(
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self.dataset_type, self.sample_type, self.callset_path,
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self.dataset_type,
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self.sample_type,
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self.callset_path,
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),
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),
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]
@@ -118,7 +120,9 @@ def additional_row_fields(self, mt):
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def create_table(self) -> hl.MatrixTable:
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filters_path = valid_filters_path(
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self.dataset_type, self.sample_type, self.callset_path,
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self.dataset_type,
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self.sample_type,
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self.callset_path,
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)
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mt = import_callset(
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self.callset_path,

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